Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 1.9e-39 165.2 77 100.0
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.1e-17 92.0 47 87.2
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.1e-17 92.0 47 87.2
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.1e-17 92.0 47 87.2
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.9e-15 85.5 46 82.6
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 2.5e-15 85.1 46 80.4
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 4.3e-15 84.3 46 82.6
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 1.3e-14 82.8 46 76.1
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 2.2e-14 82.0 46 76.1
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 2.8e-14 81.6 46 76.1
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 3.7e-14 81.3 46 73.9
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 3.7e-14 81.3 46 73.9
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 4.8e-14 80.9 46 76.1
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 4.8e-14 80.9 46 76.1
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.8e-14 80.9 47 74.5
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 4.8e-14 80.9 47 74.5
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 4.8e-14 80.9 47 74.5
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 6.3e-14 80.5 46 76.1
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 8.2e-14 80.1 46 73.9
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 8.2e-14 80.1 47 70.2
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 8.2e-14 80.1 46 73.9
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 8.2e-14 80.1 46 73.9
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 8.2e-14 80.1 46 73.9
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 1.1e-13 79.7 46 73.9
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 1.1e-13 79.7 47 74.5
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.1e-13 79.7 46 73.9
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 1.4e-13 79.3 47 74.5
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 1.4e-13 79.3 46 73.9
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.4e-13 79.3 47 72.3
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.4e-13 79.3 47 74.5
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.4e-13 79.3 46 71.7
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 1.8e-13 79.0 46 71.7
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.8e-13 79.0 46 73.9
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 1.8e-13 79.0 46 73.9
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 2.4e-13 78.6 46 73.9
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 2.4e-13 78.6 46 71.7
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 3.1e-13 78.2 46 71.7
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 3.1e-13 78.2 46 73.9
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 3.1e-13 78.2 47 72.3
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 4.1e-13 77.8 46 69.6
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 4.1e-13 77.8 46 69.6
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 4.1e-13 77.8 46 71.7
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 4.1e-13 77.8 46 73.9
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 4.1e-13 77.8 46 71.7
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 4.1e-13 77.8 46 73.9
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 4.1e-13 77.8 46 71.7
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 4.1e-13 77.8 46 69.6
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 5.3e-13 77.4 46 69.6
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 6.9e-13 77.0 46 71.7
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 9.1e-13 76.6 46 71.7
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 9.1e-13 76.6 46 69.6
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 9.1e-13 76.6 46 71.7
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.2e-12 76.3 46 73.9
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 1.2e-12 76.3 46 67.4
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 1.2e-12 76.3 46 69.6
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.2e-12 76.3 46 71.7
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.2e-12 76.3 46 71.7
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.5e-12 75.9 46 71.7
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.5e-12 75.9 46 69.6
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.5e-12 75.9 46 67.4
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 2.0e-12 75.5 46 69.6
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.0e-12 75.5 46 67.4
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 2.6e-12 75.1 46 67.4
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 2.6e-12 75.1 46 69.6
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 3.4e-12 74.7 47 68.1
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 4.5e-12 74.3 46 65.2
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 4.5e-12 74.3 46 67.4
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 4.5e-12 74.3 46 65.2
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 5.9e-12 73.9 46 67.4
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 5.9e-12 73.9 46 67.4
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 5.9e-12 73.9 46 67.4
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 5.9e-12 73.9 46 67.4
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 5.9e-12 73.9 46 69.6
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 7.7e-12 73.6 46 67.4
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 7.7e-12 73.6 46 65.2
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 7.7e-12 73.6 46 63.0
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 7.7e-12 73.6 46 65.2
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 7.7e-12 73.6 46 63.0
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 7.7e-12 73.6 46 67.4
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.3e-11 72.8 46 67.4
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 1.3e-11 72.8 46 67.4
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.3e-11 72.8 46 67.4
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.3e-11 72.8 46 63.0
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.3e-11 72.8 46 65.2
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 1.3e-11 72.8 46 60.9
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.3e-11 72.8 46 63.0
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 1.7e-11 72.4 46 65.2
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 1.7e-11 72.4 46 65.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.7e-11 72.4 46 67.4
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 2.2e-11 72.0 46 65.2
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 2.2e-11 72.0 46 69.6
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 2.2e-11 72.0 46 65.2
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 2.9e-11 71.6 46 65.2
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 2.9e-11 71.6 46 63.0
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 3.8e-11 71.2 46 65.2
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 3.8e-11 71.2 46 65.2
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 5.0e-11 70.9 46 60.9
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 6.5e-11 70.5 46 58.7
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 6.5e-11 70.5 46 58.7
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 6.5e-11 70.5 46 58.7
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 6.5e-11 70.5 49 57.1
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 8.5e-11 70.1 46 60.9
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 8.5e-11 70.1 46 60.9
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.4e-10 69.3 57 57.9
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 2.5e-10 68.6 46 65.2
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.5e-10 68.6 46 58.7
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.5e-10 68.6 46 65.2
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 3.2e-10 68.2 46 60.9
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 7.2e-10 67.0 46 60.9
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 9.4e-10 66.6 46 58.7
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 9.4e-10 66.6 46 58.7
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 9.4e-10 66.6 46 58.7
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 9.4e-10 66.6 46 58.7
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 2.1e-09 65.5 46 63.0
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 3.6e-09 64.7 44 61.4
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 1.4e-08 62.8 47 57.4
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 1.5e-07 59.3 46 47.8
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.3e-06 56.2 47 53.2
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.2e-06 55.5 44 45.5
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 6.3e-06 53.9 27 77.8


User provided reference genes

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