Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 0.0e+00 1734.9 882 100.0
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 0.0e+00 1200.3 907 72.8
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.8e-250 869.8 1090 50.9
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 6.1e-206 721.8 1187 42.5
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 1.5e-172 610.9 943 44.4
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.5e-159 567.8 900 42.8
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 6.4e-155 552.4 1017 39.0
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 1.4e-154 551.2 982 40.4
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 4.6e-153 546.2 931 41.6
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 2.5e-151 540.4 947 41.6
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 1.6e-150 537.7 1048 38.5
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 4.8e-150 536.2 954 41.0
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.4e-149 534.6 973 41.4
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 2.4e-149 533.9 940 41.0
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 2.4e-149 533.9 973 41.3
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 3.1e-149 533.5 945 41.2
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 3.1e-149 533.5 1094 37.6
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 1.2e-148 531.6 960 40.9
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 3.4e-148 530.0 1114 36.4
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 5.8e-148 529.3 960 40.9
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.7e-147 527.7 937 40.3
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.4e-146 524.6 935 40.4
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 4.2e-146 523.1 1042 38.2
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 7.1e-146 522.3 948 40.1
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.2e-145 521.5 976 40.9
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 1.3e-144 518.1 906 41.5
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 5.7e-143 512.7 985 40.7
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 5.9e-140 502.7 996 38.0
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 1.0e-139 501.9 1007 37.7
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 5.0e-139 499.6 1016 38.0
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 8.5e-139 498.8 944 39.0
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.9e-138 497.7 1141 35.5
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 2.7e-137 493.8 1212 35.2
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 3.3e-135 486.9 990 37.0
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.3e-134 485.0 902 40.4
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 6.3e-134 482.6 1074 35.6
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 1.2e-132 478.4 1037 37.5
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 3.4e-132 476.9 719 46.7
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 4.2e-130 469.9 950 36.8
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 5.1e-128 463.0 1052 35.4
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 1.4e-125 454.9 1075 35.4
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 1.2e-124 451.8 1189 32.5
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.3e-123 448.4 1025 35.8
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 3.8e-123 446.8 1077 35.3
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 3.2e-122 443.7 1101 33.8
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 3.2e-122 443.7 1086 33.1
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 4.7e-121 439.9 1065 34.6
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 5.2e-120 436.4 1020 35.7
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 9.7e-119 432.2 905 37.7
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 1.3e-118 431.8 1146 33.6
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 3.7e-118 430.3 1283 31.4
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 1.4e-117 428.3 1010 34.7
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 5.3e-117 426.4 1012 34.3
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 1.1e-114 418.7 974 35.2
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 1.9e-114 417.9 893 35.7
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 2.5e-114 417.5 896 36.8
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.2e-113 415.2 1207 31.6
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 1.2e-113 415.2 1131 32.9
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.6e-113 414.8 1099 34.1
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 2.1e-113 414.5 975 35.6
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 6.7e-112 409.5 1248 32.2
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 1.2e-111 408.7 1050 34.3
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.2e-111 408.7 1067 33.1
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 1.5e-111 408.3 1152 32.6
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 3.3e-111 407.1 989 34.3
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 7.5e-111 406.0 1070 33.0
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 1.3e-110 405.2 1318 29.4
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 2.8e-110 404.1 1064 32.9
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 2.9e-107 394.0 990 34.9
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 3.2e-106 390.6 892 35.0
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 6.1e-105 386.3 1230 29.5
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.8e-104 384.8 1081 32.2
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 1.8e-104 384.8 1236 30.5
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 4.0e-104 383.6 695 41.7
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 4.8e-102 376.7 1140 31.0
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.1e-101 375.6 611 44.0
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 6.6e-99 366.3 964 33.8
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 4.5e-92 343.6 889 32.6
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 1.3e-86 325.5 493 43.6
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 3.7e-86 323.9 1244 28.9
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 7.0e-85 319.7 531 42.6
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 2.7e-84 317.8 1281 27.4
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 1.0e-83 315.8 515 41.0
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 6.6e-83 313.2 311 58.2
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 1.5e-82 312.0 554 41.3
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 1.9e-82 311.6 538 40.0
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 5.6e-82 310.1 426 44.8
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 2.3e-80 304.7 555 39.6
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 5.2e-80 303.5 531 39.9
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 1.2e-79 302.4 534 39.7
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 2.0e-79 301.6 531 39.5
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 7.5e-79 299.7 899 31.5
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 1.7e-78 298.5 554 39.5
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 8.3e-78 296.2 934 31.2
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 7.0e-77 293.1 876 32.0
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 1.2e-76 292.4 882 31.4
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 3.9e-75 287.3 429 45.0
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 1.1e-72 279.3 1108 27.1
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 1.2e-71 275.8 1041 28.3
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.5e-71 275.4 620 36.8
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 6.4e-70 270.0 521 38.0
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 1.6e-68 265.4 326 53.1
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 3.5e-68 264.2 1132 27.7
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 6.0e-68 263.5 681 34.2
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 5.1e-67 260.4 354 46.3
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 8.6e-67 259.6 543 37.8
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 1.1e-66 259.2 1110 28.8
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 1.9e-66 258.5 541 37.3
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 1.9e-66 258.5 541 37.3
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 4.3e-66 257.3 846 30.3
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 7.3e-66 256.5 681 33.9
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 1.2e-65 255.8 852 30.8
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.5e-63 248.8 404 42.8
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 4.4e-63 247.3 569 35.0
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 4.2e-61 240.7 899 29.1
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 1.3e-59 235.7 920 28.6
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 2.3e-59 235.0 1130 26.3
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 1.9e-58 231.9 1142 26.5
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 5.6e-58 230.3 901 28.9
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 1.8e-56 225.3 1140 25.1
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 3.0e-51 208.0 309 44.0
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 8.7e-51 206.5 319 39.8
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 9.6e-50 203.0 1096 25.4
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.8e-43 182.2 158 60.1
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 1.9e-42 178.7 368 37.0
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 4.3e-42 177.6 165 57.6
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 5.6e-42 177.2 331 39.0
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 1.4e-40 172.6 260 41.9
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 5.3e-40 170.6 260 41.5
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 5.3e-40 170.6 260 41.5
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 2.6e-39 168.3 281 36.7
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 4.9e-38 164.1 312 37.2
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.1e-37 162.9 237 42.6
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 1.2e-36 159.5 207 46.4
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 1.6e-36 159.1 278 41.7
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 6.7e-35 153.7 387 31.3
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 6.9e-32 143.7 382 31.9
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 6.9e-32 143.7 218 39.4
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.2e-28 132.9 150 54.0
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 1.3e-27 129.4 212 39.2
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.8e-27 129.0 266 33.1
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.9e-27 127.9 212 37.7
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 2.8e-25 121.7 205 38.5
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 1.8e-24 119.0 176 42.0
Lj7A297T46 Lonicera japonica HOM05D004393 ORTHO05D004897 5.3e-24 117.5 164 46.3
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.0e-22 113.2 726 25.2
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 3.2e-21 108.2 131 48.9
Peaxi162Scf00207g01618 Petunia axillaris HOM05D004393 ORTHO05D004897 4.6e-20 104.4 210 39.0
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 1.4e-19 102.8 173 39.3
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 6.3e-17 94.0 131 47.3
Lj7A297T45 Lonicera japonica HOM05D004393 ORTHO05D004897 9.1e-16 90.1 210 37.1
Eucgr.F02629 Eucalyptus grandis HOM05D004393 ORTHO05D004897 1.4e-13 82.8 246 31.3
PGR044G2736 Punica granatum HOM05D000582 ORTHO05D000456 5.5e-13 80.9 87 52.9
arahy.Tifrunner.gnm1.ann1.9CDI8S Arachis hypogaea HOM05D004393 ORTHO05D004897 9.4e-13 80.1 94 44.7
Lalb_Chr24g0401081 Lupinus albus HOM05D004393 ORTHO05D004897 2.1e-12 79.0 75 53.3
BcaB04g17879 Brassica carinata HOM05D004393 ORTHO05D004897 3.9e-11 74.7 82 50.0
TAR633G1505 Trochodendron aralioides HOM05D004393 ORTHO05D004897 3.9e-11 74.7 115 44.3
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 6.3e-09 67.4 103 38.8
AT5G38840 Arabidopsis thaliana HOM05D005170 ORTHO05D006985 5.0e-06 57.8 101 36.6


User provided reference genes

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