Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12441 Vaccinium macrocarpon HOM05D000088 ORTHO05D034835 2.0e-36 155.2 77 100.0
Rhsim06G0121500 Rhododendron simsii HOM05D000088 ORTHO05D003056 6.5e-19 97.1 77 67.5
Actinidia11191 Actinidia chinensis HOM05D000088 ORTHO05D003056 5.5e-18 94.0 66 71.2
Actinidia32525 Actinidia chinensis HOM05D000088 ORTHO05D003056 7.2e-18 93.6 69 73.9
CSS0049865 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D003056 1.5e-15 85.9 67 70.1
Gohir.D04G037900 Gossypium hirsutum HOM05D000088 ORTHO05D003056 1.6e-14 82.4 69 60.9
Gorai.012G042800 Gossypium raimondii HOM05D000088 ORTHO05D003056 1.6e-14 82.4 69 60.9
Glyma.02G288300 Glycine max HOM05D000088 ORTHO05D003056 1.8e-13 79.0 70 58.6
Thecc.01G159600 Theobroma cacao HOM05D000088 ORTHO05D003056 1.8e-13 79.0 68 58.8
Manes.02G086000 Manihot esculenta HOM05D000088 ORTHO05D003056 2.4e-13 78.6 69 55.1
Glyma.14G026700 Glycine max HOM05D000088 ORTHO05D003056 4.1e-13 77.8 70 57.1
RcHm_v2.0_Chr2g0150911 Rosa chinensis HOM05D000088 ORTHO05D003056 2.0e-12 75.5 69 58.0
Thecc.06G161000 Theobroma cacao HOM05D000088 ORTHO05D003056 2.0e-12 75.5 68 57.4
Gohir.D06G140100 Gossypium hirsutum HOM05D000088 ORTHO05D003056 3.4e-12 74.7 69 56.5
Glyma.13G223400 Glycine max HOM05D000088 ORTHO05D003056 4.5e-12 74.3 75 56.0
Gohir.A06G123300 Gossypium hirsutum HOM05D000088 ORTHO05D003056 4.5e-12 74.3 69 56.5
Atru.chr10.1487 Acer truncatum HOM05D000088 ORTHO05D003056 5.9e-12 73.9 65 55.4
Glyma.15G088500 Glycine max HOM05D000088 ORTHO05D003056 5.9e-12 73.9 69 58.0
MD09G1155800 Malus domestica HOM05D000088 ORTHO05D003056 5.9e-12 73.9 63 57.1
VMungo0647G1096 Vigna mungo HOM05D000088 ORTHO05D003056 5.9e-12 73.9 70 54.3
Gorai.010G163500 Gossypium raimondii HOM05D000088 ORTHO05D003056 1.0e-11 73.2 69 55.1
Lj2A314T77 Lonicera japonica HOM05D000088 ORTHO05D003056 1.0e-11 73.2 68 58.8
FAN02G1512 Fragaria x ananassa HOM05D000088 ORTHO05D034835 1.3e-11 72.8 69 56.5
FAN02G3907 Fragaria x ananassa HOM05D000088 ORTHO05D003056 1.3e-11 72.8 69 56.5
FAN05G4261 Fragaria x ananassa HOM05D000088 ORTHO05D003056 1.3e-11 72.8 69 56.5
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 1.3e-11 72.8 60 58.3
Duzib192G0752 Durio zibethinus HOM05D000088 ORTHO05D003056 1.7e-11 72.4 60 58.3
Nn6g34419 Nelumbo nucifera HOM05D000088 ORTHO05D003056 1.7e-11 72.4 67 53.7
Ciclev10031500m.g Citrus clementina HOM05D000088 ORTHO05D003056 2.2e-11 72.0 69 52.2
Migut.M00229 Erythranthe guttata HOM05D000088 ORTHO05D003056 2.2e-11 72.0 70 55.7
Lj6g0019783 Lotus japonicus HOM05D000088 ORTHO05D003056 2.2e-11 72.0 68 57.4
Manes.15G115400 Manihot esculenta HOM05D000088 ORTHO05D003056 2.2e-11 72.0 68 55.9
Manes.17G061900 Manihot esculenta HOM05D000088 ORTHO05D003056 2.2e-11 72.0 69 55.1
Phvul.008G264100 Phaseolus vulgaris HOM05D000088 ORTHO05D003056 2.9e-11 71.6 70 51.4
Actinidia07661 Actinidia chinensis HOM05D000088 ORTHO05D003056 3.8e-11 71.2 69 53.6
CSS0005683 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D003056 3.8e-11 71.2 69 55.1
CSS0019209 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D003056 3.8e-11 71.2 69 55.1
FAN09G4804 Fragaria x ananassa HOM05D000088 ORTHO05D003056 3.8e-11 71.2 69 55.1
Prupe.3G170100 Prunus persica HOM05D000088 ORTHO05D003056 3.8e-11 71.2 70 58.6
FvH4_6g37800 Fragaria vesca HOM05D000088 ORTHO05D003056 5.0e-11 70.9 69 55.1
QL05p052413 Quercus lobata HOM05D000088 ORTHO05D003056 5.0e-11 70.9 68 52.9
COL.COLO4_22830 Corchorus olitorius HOM05D000088 ORTHO05D003056 6.5e-11 70.5 67 56.7
FAN14G1420 Fragaria x ananassa HOM05D000088 ORTHO05D003056 6.5e-11 70.5 69 55.1
Medtr2g017825 Medicago truncatula HOM05D000088 ORTHO05D003056 6.5e-11 70.5 65 55.4
VMungo0540G0521 Vigna mungo HOM05D000088 ORTHO05D003056 6.5e-11 70.5 60 58.3
MD17G1141800 Malus domestica HOM05D000088 ORTHO05D003056 8.5e-11 70.1 63 55.6
Cpa.g.sc50.69 Carica papaya HOM05D000088 ORTHO05D003056 1.1e-10 69.7 70 52.9
Cc05_g09200 Coffea canephora HOM05D000088 ORTHO05D003056 1.1e-10 69.7 65 53.8
DCAR_027963 Daucus carota HOM05D000088 ORTHO05D003056 1.1e-10 69.7 71 52.1
Phvul.008G190300 Phaseolus vulgaris HOM05D000088 ORTHO05D003056 1.1e-10 69.7 70 50.0
TAR626G1099 Trochodendron aralioides HOM05D000088 ORTHO05D003056 1.1e-10 69.7 70 52.9
arahy.Tifrunner.gnm1.ann1.SD5LLS Arachis hypogaea HOM05D000088 ORTHO05D003056 1.4e-10 69.3 68 52.9
arahy.Tifrunner.gnm1.ann1.V32IBN Arachis hypogaea HOM05D000088 ORTHO05D003056 1.4e-10 69.3 68 52.9
Duzib160G0779 Durio zibethinus HOM05D000088 ORTHO05D003056 1.4e-10 69.3 60 55.0
arahy.Tifrunner.gnm1.ann1.B95PWX Arachis hypogaea HOM05D000088 ORTHO05D003056 2.5e-10 68.6 70 50.0
arahy.Tifrunner.gnm1.ann1.S296UP Arachis hypogaea HOM05D000088 ORTHO05D003056 2.5e-10 68.6 70 50.0
Dinv12721 Davidia involucrata HOM05D000088 ORTHO05D003056 2.5e-10 68.6 65 56.9
LjContig00310g0008405 Lotus japonicus HOM05D000088 ORTHO05D003056 3.2e-10 68.2 70 48.6
Lalb_Chr18g0054961 Lupinus albus HOM05D000088 ORTHO05D003056 4.2e-10 67.8 60 56.7
THA.LOC104802272 Tarenaya hassleriana HOM05D000088 ORTHO05D003056 4.2e-10 67.8 69 50.7
TWI09G1601 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 4.2e-10 67.8 64 54.7
ClCG01G024070 Citrullus lanatus HOM05D000088 ORTHO05D003056 5.5e-10 67.4 71 52.1
Solyc07g055870.4 Solanum lycopersicum HOM05D000088 ORTHO05D003056 5.5e-10 67.4 67 49.3
TPR.G4487 Trifolium pratense HOM05D000088 ORTHO05D003056 5.5e-10 67.4 65 52.3
CiPaw.09G133600 Carya illinoinensis HOM05D000088 ORTHO05D003056 7.2e-10 67.0 70 51.4
Lalb_Chr15g0086531 Lupinus albus HOM05D000088 ORTHO05D003056 7.2e-10 67.0 65 52.3
Phvul.006G169700 Phaseolus vulgaris HOM05D000088 ORTHO05D003056 7.2e-10 67.0 66 56.1
TAR427G0001 Trochodendron aralioides HOM05D000088 ORTHO05D003056 7.2e-10 67.0 70 57.1
HanXRQChr16g0519341 Helianthus annuus HOM05D000088 ORTHO05D003056 1.2e-09 66.2 61 50.8
Lj1C1178G13 Lonicera japonica HOM05D000088 ORTHO05D003056 1.2e-09 66.2 68 52.9
MELO3C007182.2 Cucumis melo HOM05D000088 ORTHO05D003056 1.6e-09 65.9 71 50.7
CsaV3_6G051210 Cucumis sativus L. HOM05D000088 ORTHO05D003056 1.6e-09 65.9 71 50.7
Cfa001064 Carpinus fangiana HOM05D000088 ORTHO05D003056 2.1e-09 65.5 68 52.9
Duzib264G0387 Durio zibethinus HOM05D000088 ORTHO05D003056 2.1e-09 65.5 69 52.2
Lalb_Chr10g0106791 Lupinus albus HOM05D000088 ORTHO05D003056 2.1e-09 65.5 70 50.0
QL08p043660 Quercus lobata HOM05D000088 ORTHO05D003056 2.1e-09 65.5 68 50.0
Sed0004665 Sechium edule HOM05D000042 ORTHO05D000028 2.1e-09 65.5 60 55.0
FAN11G1670 Fragaria x ananassa HOM05D000088 ORTHO05D003056 2.7e-09 65.1 66 51.5
Gohir.A10G033200 Gossypium hirsutum HOM05D000088 ORTHO05D003056 2.7e-09 65.1 60 55.0
Nitab4.5_0005138g0040 Nicotiana tabacum HOM05D000088 ORTHO05D003056 3.6e-09 64.7 60 53.3
Nitab4.5_0007204g0020 Nicotiana tabacum HOM05D000088 ORTHO05D003056 3.6e-09 64.7 60 53.3
TPR.G12651 Trifolium pratense HOM05D000088 ORTHO05D003056 3.6e-09 64.7 69 49.3
CDE06G1333 Ceratophyllum demersum HOM05D000088 ORTHO05D003056 4.6e-09 64.3 73 46.6
Ca_00492_v3 Cicer arietinum L. HOM05D000088 ORTHO05D003056 4.6e-09 64.3 69 50.7
Prupe.4G070400 Prunus persica HOM05D000088 ORTHO05D003056 4.6e-09 64.3 69 49.3
RcHm_v2.0_Chr5g0012421 Rosa chinensis HOM05D000088 ORTHO05D003056 4.6e-09 64.3 66 51.5
ATR0602G264 Amborella trichopoda HOM05D000088 ORTHO05D003056 6.1e-09 63.9 69 50.7
GSVIVG01021301001 Vitis vinifera HOM05D000088 ORTHO05D003056 6.1e-09 63.9 66 51.5
Cfa021596 Carpinus fangiana HOM05D000088 ORTHO05D003056 7.9e-09 63.5 69 55.1
PGSC0003DMG400017293 Solanum tuberosum HOM05D000088 ORTHO05D003056 7.9e-09 63.5 66 47.0
Eucgr.K01192 Eucalyptus grandis HOM05D000088 ORTHO05D003056 1.0e-08 63.2 64 46.9
Aqoxy1G01898 Aquilegia oxysepala HOM05D000088 ORTHO05D003056 1.8e-08 62.4 66 45.5
CANSAT64G1180 Cannabis sativa HOM05D000088 ORTHO05D003056 1.8e-08 62.4 60 50.0
CANSAT64G2650 Cannabis sativa HOM05D000088 ORTHO05D003056 1.8e-08 62.4 60 50.0
MD10G1271100 Malus domestica HOM05D000088 ORTHO05D003056 1.8e-08 62.4 69 49.3
Peaxi162Scf00022g00612 Petunia axillaris HOM05D000088 ORTHO05D003056 1.8e-08 62.4 70 50.0
Psat2g015120 Pisum sativum HOM05D000088 ORTHO05D003056 1.8e-08 62.4 69 46.4
Sopen07g029240 Solanum pennellii HOM05D000088 ORTHO05D003056 1.8e-08 62.4 61 47.5
CiPaw.10G098700 Carya illinoinensis HOM05D000088 ORTHO05D003056 2.3e-08 62.0 67 53.7
FAN16G0560 Fragaria x ananassa HOM05D000088 ORTHO05D003056 2.3e-08 62.0 66 50.0
MD05G1293800 Malus domestica HOM05D000088 ORTHO05D003056 3.0e-08 61.6 69 47.8
Peaxi162Scf00154g00618 Petunia axillaris HOM05D000088 ORTHO05D003056 3.0e-08 61.6 48 56.2
Sopen02g020730 Solanum pennellii HOM05D000088 ORTHO05D003056 3.0e-08 61.6 67 46.3
FAN21G1415 Fragaria x ananassa HOM05D000088 ORTHO05D003056 5.1e-08 60.8 66 50.0
FAN21G3662 Fragaria x ananassa HOM05D000088 ORTHO05D003056 5.1e-08 60.8 66 50.0
PGSC0003DMG400028443 Solanum tuberosum HOM05D000088 ORTHO05D003056 5.1e-08 60.8 67 46.3
Oeu021548.1 Olea europaea HOM05D000088 ORTHO05D003056 6.7e-08 60.5 60 55.0
FAN25G1188 Fragaria x ananassa HOM05D000088 ORTHO05D003056 8.8e-08 60.1 60 50.0
Gorai.011G035600 Gossypium raimondii HOM05D000088 ORTHO05D003056 8.8e-08 60.1 60 51.7
PSO541G2251 Papaver somniferum HOM05D000088 ORTHO05D003056 1.1e-07 59.7 68 41.2
PSO541G4399 Papaver somniferum HOM05D000088 ORTHO05D003056 1.1e-07 59.7 66 50.0
PSO675G0954 Papaver somniferum HOM05D000088 ORTHO05D003056 1.1e-07 59.7 66 50.0
Solyc02g071740.3 Solanum lycopersicum HOM05D000088 ORTHO05D003056 1.1e-07 59.7 67 44.8
CAN.G1481.8 Capsicum annuum HOM05D000088 ORTHO05D003056 2.0e-07 58.9 46 50.0
ClCG03G007320 Citrullus lanatus HOM05D000088 ORTHO05D003056 2.0e-07 58.9 68 45.6
Cc02_g16100 Coffea canephora HOM05D000088 ORTHO05D003056 2.0e-07 58.9 65 50.8
MELO3C002689.2 Cucumis melo HOM05D000088 ORTHO05D003056 2.0e-07 58.9 68 47.1
Medtr5g091880 Medicago truncatula HOM05D000088 ORTHO05D003056 2.0e-07 58.9 69 47.8
THA.LOC104806173 Tarenaya hassleriana HOM05D000088 ORTHO05D003056 3.3e-07 58.2 43 55.8
ECA234G0185 Erigeron canadensis HOM05D000088 ORTHO05D003056 4.4e-07 57.8 60 43.3
Nitab4.5_0000982g0020 Nicotiana tabacum HOM05D000088 ORTHO05D003056 4.4e-07 57.8 69 49.3
Sed0009859 Sechium edule HOM05D000088 ORTHO05D003056 4.4e-07 57.8 68 44.1
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 5.7e-07 57.4 66 45.5
Hma1.2p1_0336F.1_g129010 Hydrangea macrophylla HOM05D000088 ORTHO05D003056 5.7e-07 57.4 49 53.1
PSO675G5861 Papaver somniferum HOM05D000088 ORTHO05D003056 5.7e-07 57.4 68 39.7
HPP92_005187 Vanilla planifolia HOM05D000088 ORTHO05D003056 5.7e-07 57.4 66 39.4
CAN.G1537.17 Capsicum annuum HOM05D000088 ORTHO05D003056 9.7e-07 56.6 70 48.6
CAN.G411.3 Capsicum annuum HOM05D000088 ORTHO05D003056 9.7e-07 56.6 57 47.4
Nitab4.5_0002507g0100 Nicotiana tabacum HOM05D000088 ORTHO05D003056 9.7e-07 56.6 69 49.3
CsaV3_1G032940 Cucumis sativus L. HOM05D000088 ORTHO05D003056 1.3e-06 56.2 68 44.1
Lsat_1_v5_gn_4_46940 Lactuca sativa HOM05D000088 ORTHO05D003056 1.3e-06 56.2 61 41.0
BcaB04g18510 Brassica carinata HOM05D000088 ORTHO05D003056 1.7e-06 55.8 67 44.8
BcaB02g08237 Brassica carinata HOM05D000088 ORTHO05D003056 2.2e-06 55.5 66 45.5
BcaC02g10028 Brassica carinata HOM05D000088 ORTHO05D003056 2.2e-06 55.5 66 45.5
C04p33740 Brassica napus HOM05D000088 ORTHO05D003056 2.2e-06 55.5 66 45.5
BolC4t24942H Brassica oleracea HOM05D000088 ORTHO05D003056 2.2e-06 55.5 66 45.5
BraA04t15966Z Brassica rapa HOM05D000088 ORTHO05D003056 2.2e-06 55.5 66 45.5
Thhalv10025157m.g Eutrema salsugineum HOM05D000088 ORTHO05D003056 2.2e-06 55.5 69 44.9
AL7G35220 Arabidopsis lyrata HOM05D000088 ORTHO05D003056 3.7e-06 54.7 69 43.5
AT4G18950 Arabidopsis thaliana HOM05D000088 ORTHO05D003056 3.7e-06 54.7 43 51.2
Carub.0007s2223 Capsella rubella HOM05D000088 ORTHO05D003056 3.7e-06 54.7 43 51.2
CARHR225830 Cardamine hirsuta HOM05D000088 ORTHO05D003056 3.7e-06 54.7 43 51.2
CsaV3_6G015740 Cucumis sativus L. HOM05D000088 ORTHO05D003056 3.7e-06 54.7 70 42.9
BcaC09g51461 Brassica carinata HOM05D000088 ORTHO05D003056 4.8e-06 54.3 43 51.2
A01p10960 Brassica napus HOM05D000088 ORTHO05D003056 4.8e-06 54.3 43 51.2
C01p12990 Brassica napus HOM05D000088 ORTHO05D003056 4.8e-06 54.3 43 51.2
BolC1t01272H Brassica oleracea HOM05D000088 ORTHO05D003056 4.8e-06 54.3 43 51.2
BraA01t01043Z Brassica rapa HOM05D000088 ORTHO05D003056 4.8e-06 54.3 43 51.2
Eucgr.E02861 Eucalyptus grandis HOM05D000088 ORTHO05D003056 4.8e-06 54.3 68 44.1
Sed0007975 Sechium edule HOM05D000088 ORTHO05D003056 4.8e-06 54.3 61 49.2
HPP92_009862 Vanilla planifolia HOM05D000088 ORTHO05D003056 4.8e-06 54.3 68 41.2
Actinidia39537 Actinidia chinensis HOM05D000088 ORTHO05D003056 6.3e-06 53.9 69 46.4
THA.LOC104803137 Tarenaya hassleriana HOM05D000088 ORTHO05D003056 6.3e-06 53.9 38 57.9
BcaNung04872 Brassica carinata HOM05D000088 ORTHO05D003056 8.2e-06 53.5 43 51.2
ECA236G3819 Erigeron canadensis HOM05D000088 ORTHO05D003056 8.2e-06 53.5 60 45.0
Sp7g17660 Schrenkiella parvula HOM05D000088 ORTHO05D003056 8.2e-06 53.5 43 51.2


User provided reference genes

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