Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12418 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 3.0e-168 595.1 301 100.0
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 1.0e-83 314.3 231 74.9
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 2.9e-83 312.8 231 72.3
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 1.2e-81 307.4 231 72.7
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 1.5e-79 300.4 231 68.4
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 2.6e-79 299.7 231 69.7
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 3.4e-79 299.3 230 72.2
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 3.7e-78 295.8 229 69.9
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 4.8e-78 295.4 228 70.2
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 4.8e-78 295.4 231 68.0
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 6.3e-78 295.0 229 68.1
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 1.1e-77 294.3 231 69.3
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 2.4e-77 293.1 231 66.7
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 4.1e-77 292.4 230 70.4
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 5.4e-77 292.0 230 70.0
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 7.0e-77 291.6 229 69.0
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 7.0e-77 291.6 230 67.0
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 2.0e-76 290.0 229 69.0
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 2.7e-76 289.7 229 69.0
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 3.5e-76 289.3 230 67.8
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.7e-75 287.0 230 66.1
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 1.7e-75 287.0 230 66.5
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 2.9e-75 286.2 231 67.1
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 5.0e-75 285.4 231 68.0
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 6.6e-75 285.0 229 67.2
FvH4_6g27881 Fragaria vesca HOM05D004117 ORTHO05D004520 6.6e-75 285.0 230 66.5
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 8.6e-75 284.6 229 68.1
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 1.1e-74 284.3 230 66.5
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 2.5e-74 283.1 230 66.1
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 3.3e-74 282.7 232 66.8
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 4.2e-74 282.3 230 65.2
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 4.2e-74 282.3 230 67.8
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 5.5e-74 282.0 236 67.4
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 7.2e-74 281.6 229 67.7
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 9.5e-74 281.2 232 67.2
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 1.6e-73 280.4 229 66.4
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 2.1e-73 280.0 229 67.2
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 2.8e-73 279.6 230 67.0
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 3.6e-73 279.3 226 68.1
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 3.6e-73 279.3 226 68.1
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 3.6e-73 279.3 226 68.1
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 4.7e-73 278.9 245 60.4
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 8.0e-73 278.1 230 67.0
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 8.0e-73 278.1 230 66.5
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 1.0e-72 277.7 229 67.7
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 1.8e-72 276.9 229 66.8
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 2.3e-72 276.6 229 64.6
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 4.0e-72 275.8 231 63.6
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 5.2e-72 275.4 219 67.1
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 5.2e-72 275.4 231 63.6
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 6.8e-72 275.0 230 64.8
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 1.2e-71 274.2 226 67.3
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 2.0e-71 273.5 233 63.1
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 2.6e-71 273.1 229 64.6
Ciclev10018149m.g Citrus clementina HOM05D004117 ORTHO05D004520 2.6e-71 273.1 232 62.9
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 3.4e-71 272.7 228 64.0
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 7.5e-71 271.6 229 65.1
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 9.8e-71 271.2 231 63.6
Ah.01g004740 Amaranthus hybridus HOM05D004117 ORTHO05D004520 1.3e-70 270.8 226 63.3
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 1.7e-70 270.4 230 67.4
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 2.2e-70 270.0 226 63.3
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 2.8e-70 269.6 231 63.2
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 3.7e-70 269.2 231 63.2
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 4.9e-70 268.9 231 62.8
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 4.9e-70 268.9 230 64.3
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 4.9e-70 268.9 230 66.1
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 6.3e-70 268.5 228 65.8
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 8.3e-70 268.1 231 62.8
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 8.3e-70 268.1 229 64.2
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 8.3e-70 268.1 229 64.2
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 8.3e-70 268.1 229 62.4
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 8.3e-70 268.1 230 63.5
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 1.1e-69 267.7 231 62.3
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 1.4e-69 267.3 230 66.5
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 1.8e-69 266.9 231 61.9
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 2.4e-69 266.5 231 62.3
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 2.4e-69 266.5 228 63.6
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 2.4e-69 266.5 229 63.8
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 2.4e-69 266.5 228 64.5
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 2.4e-69 266.5 229 62.9
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 3.1e-69 266.2 226 65.9
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 5.4e-69 265.4 230 62.2
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 5.4e-69 265.4 230 62.6
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 9.2e-69 264.6 231 61.9
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 1.2e-68 264.2 229 63.3
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 1.6e-68 263.8 231 62.8
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 1.6e-68 263.8 231 62.8
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 7.8e-68 261.5 241 60.6
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 1.3e-67 260.8 231 61.0
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 1.3e-67 260.8 231 63.6
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 2.9e-67 259.6 231 61.0
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 2.9e-67 259.6 230 64.8
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 3.8e-67 259.2 230 62.6
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 3.8e-67 259.2 229 60.7
Zm00001eb270990 Zea mays HOM05D004117 ORTHO05D004520 7.3e-66 255.0 229 59.0
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 1.0e-64 251.1 192 70.3
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 1.4e-64 250.8 192 70.3
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 2.0e-63 246.9 228 62.3
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 1.7e-62 243.8 230 57.8
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 8.3e-62 241.5 257 52.9
Nitab4.5_0003479g0010 Nicotiana tabacum HOM05D004117 ORTHO05D004520 1.4e-61 240.7 174 71.8
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.4e-61 240.7 230 59.6
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 1.4e-61 240.7 230 56.5
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 9.2e-61 238.0 231 57.1
QL08p042883 Quercus lobata HOM05D004117 ORTHO05D004520 3.5e-60 236.1 161 74.5
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 4.6e-60 235.7 230 57.4
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 7.8e-60 235.0 174 69.0
unitig_62.g23113 Utricularia gibba HOM05D004117 ORTHO05D004520 3.9e-59 232.6 210 61.4
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 5.0e-59 232.3 165 73.3
CAN.G803.16 Capsicum annuum HOM05D004117 ORTHO05D004520 6.6e-59 231.9 154 76.6
Nitab4.5_0000990g0060 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.5e-58 229.9 174 70.1
Haze_13436 Corylus avellana HOM05D004117 ORTHO05D004520 4.3e-58 229.2 222 60.8
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 7.3e-58 228.4 192 63.5
MELO3C014450.2 Cucumis melo HOM05D004117 ORTHO05D004520 5.2e-56 222.2 227 57.3
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 6.8e-56 221.9 192 62.5
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 8.9e-56 221.5 163 68.7
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 1.7e-54 217.2 159 70.4
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 2.2e-54 216.9 159 70.4
Hund00818 Selenicereus undatus HOM05D004117 ORTHO05D004520 4.9e-54 215.7 151 70.9
ATR0857G001 Amborella trichopoda HOM05D004117 ORTHO05D004520 1.1e-53 214.5 165 68.5
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 2.5e-50 203.4 236 54.7
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 2.1e-49 200.3 223 49.3
arahy.Tifrunner.gnm1.ann1.E1YPH0 Arachis hypogaea HOM05D004117 ORTHO05D004520 5.8e-47 192.2 228 51.8
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 5.4e-45 185.7 203 50.2
SalBow8G2638 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.3e-43 181.0 123 74.8
SalBow1G6942 Salvia bowleyana HOM05D004117 ORTHO05D004520 2.3e-43 180.3 123 74.8
SalBow6G2076 Salvia bowleyana HOM05D004117 ORTHO05D004520 2.3e-43 180.3 123 74.8
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 1.9e-42 177.2 234 48.3
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 9.5e-42 174.9 236 42.8
BcaC07g36812 Brassica carinata HOM05D004117 ORTHO05D004520 1.6e-41 174.1 244 48.4
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 1.8e-40 170.6 154 63.0
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 2.0e-39 167.2 192 47.9
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.4e-37 161.0 230 44.3
PGSC0003DMG400007799 Solanum tuberosum HOM05D004117 ORTHO05D004520 1.9e-37 160.6 248 44.8
AUR62031790 Chenopodium quinoa HOM05D004117 ORTHO05D004520 4.2e-37 159.5 230 43.0
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 3.3e-34 149.8 164 57.3
SalBow1G0209 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.8e-32 144.1 94 78.7
Ciclev10014464m.g Citrus clementina HOM05D000038 ORTHO05D000423 9.0e-32 141.7 108 67.6
GSVIVG01020778001 Vitis vinifera HOM05D000038 ORTHO05D000423 4.4e-31 139.4 105 73.3
Cre07.g330850 Chlamydomonas reinhardtii HOM05D004117 ORTHO05D004520 5.6e-26 122.5 230 35.2
Lsat_1_v5_gn_3_102840 Lactuca sativa HOM05D001936 ORTHO05D004520 8.1e-25 118.6 77 76.6
PRCOL_00002587 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 2.9e-22 110.2 237 32.9
QL08p042731 Quercus lobata HOM05D004117 ORTHO05D004520 5.6e-18 95.9 186 38.7
arahy.Tifrunner.gnm1.ann1.K0K9CW Arachis hypogaea HOM05D012221 ORTHO05D004520 1.8e-16 90.9 68 61.8
Pp3c13_2890 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.9e-13 80.9 113 48.7
MCO15G049 Micromonas commoda HOM05D004117 ORTHO05D004520 4.2e-13 79.7 190 28.4
CBR_g22972 Chara braunii HOM05D000004 ORTHO05D000002 1.0e-11 75.1 180 30.0
Mapoly0035s0035 Marchantia polymorpha HOM05D004117 ORTHO05D256391 5.6e-10 69.3 198 26.8
PRCOL_00000399 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 7.4e-10 68.9 186 30.1
CAN.G803.15 Capsicum annuum HOM05D004117 ORTHO05D004520 9.6e-10 68.6 35 91.4
arahy.Tifrunner.gnm1.ann1.DYUH96 Arachis hypogaea HOM05D009422 ORTHO05D004520 2.8e-09 67.0 46 65.2
DCAR_014033 Daucus carota HOM05D004117 ORTHO05D004520 2.8e-09 67.0 41 78.0
SalBow7G1867 Salvia bowleyana HOM05D004117 ORTHO05D004520 8.2e-09 65.5 35 85.7
Rhsim06G0124800 Rhododendron simsii HOM05D000470 ORTHO05D000348 3.1e-08 63.5 37 83.8
Lsat_1_v5_gn_5_110861 Lactuca sativa HOM05D002313 ORTHO05D004520 2.6e-07 60.5 34 82.4
QL08p042825 Quercus lobata HOM05D000013 ORTHO05D000689 3.4e-07 60.1 32 78.1
QL08p042899 Quercus lobata HOM05D004117 ORTHO05D004520 3.4e-07 60.1 38 78.9
Aa31LG10G1600 Aethionema arabicum HOM05D000068 ORTHO05D004691 1.0e-06 58.5 144 30.6
arahy.Tifrunner.gnm1.ann1.N5266S Arachis hypogaea HOM05D004117 ORTHO05D004520 1.7e-06 57.8 39 74.4
Potri.001G394500 Populus trichocarpa HOM05D000753 ORTHO05D006293 4.9e-06 56.2 143 32.9
TAR030G0002 Trochodendron aralioides HOM05D004117 ORTHO05D004520 4.9e-06 56.2 35 74.3


User provided reference genes

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