Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 1.5e-124 449.5 226 100.0
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 6.6e-72 274.6 157 88.5
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 1.4e-58 230.3 157 73.9
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 3.5e-57 225.7 157 73.9
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 1.1e-55 220.7 149 72.5
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 2.5e-47 193.0 161 63.4
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 2.5e-47 193.0 161 62.7
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 4.3e-47 192.2 161 64.0
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 4.3e-47 192.2 157 63.7
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 9.7e-47 191.0 157 61.1
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 1.3e-46 190.7 159 61.0
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 1.3e-46 190.7 162 58.0
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 3.7e-46 189.1 160 58.8
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 4.8e-46 188.7 161 60.9
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 6.3e-46 188.3 184 52.2
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 8.2e-46 188.0 165 62.4
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.1e-45 187.6 161 59.6
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 1.8e-45 186.8 149 63.8
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 2.4e-45 186.4 157 61.8
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 3.1e-45 186.0 158 62.0
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 1.2e-44 184.1 161 61.5
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.2e-44 184.1 158 60.1
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.5e-44 183.7 156 59.6
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 5.9e-44 181.8 163 59.5
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 5.9e-44 181.8 157 58.6
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 7.7e-44 181.4 158 59.5
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.0e-43 181.0 158 59.5
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 6.5e-43 178.3 163 55.8
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 8.5e-43 177.9 157 55.4
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 1.4e-42 177.2 161 59.0
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.9e-42 176.8 163 55.8
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.9e-42 176.8 157 54.1
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 2.5e-42 176.4 160 59.4
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 5.5e-42 175.3 161 60.2
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 5.5e-42 175.3 133 69.2
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 1.2e-41 174.1 159 59.1
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 1.6e-41 173.7 160 57.5
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 2.1e-41 173.3 146 58.9
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 3.6e-41 172.6 157 57.3
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 4.6e-41 172.2 167 57.5
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 4.6e-41 172.2 157 53.5
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 6.1e-41 171.8 155 56.1
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 7.9e-41 171.4 168 52.4
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 7.9e-41 171.4 162 58.0
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 1.0e-40 171.0 161 53.4
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 1.0e-40 171.0 158 58.9
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 1.4e-40 170.6 162 55.6
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 2.3e-40 169.9 160 56.2
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 3.0e-40 169.5 157 53.5
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 3.9e-40 169.1 156 53.2
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 6.7e-40 168.3 160 57.5
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 2.0e-39 166.8 173 53.2
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 2.0e-39 166.8 157 51.6
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 2.5e-39 166.4 158 57.6
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 2.5e-39 166.4 158 58.2
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 3.3e-39 166.0 158 58.2
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 4.3e-39 165.6 153 56.9
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 5.7e-39 165.2 157 54.8
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 1.3e-38 164.1 160 56.9
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 1.7e-38 163.7 154 57.1
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 1.7e-38 163.7 157 52.2
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 2.2e-38 163.3 156 55.1
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 2.2e-38 163.3 157 51.6
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 3.7e-38 162.5 161 50.9
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 3.7e-38 162.5 157 54.8
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 3.7e-38 162.5 159 54.7
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 3.7e-38 162.5 157 52.9
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 3.7e-38 162.5 157 55.4
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 4.8e-38 162.2 157 52.9
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 8.2e-38 161.4 157 52.9
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 8.2e-38 161.4 157 52.9
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 8.2e-38 161.4 157 52.9
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 8.2e-38 161.4 157 52.9
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 1.1e-37 161.0 161 50.9
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 1.4e-37 160.6 153 54.9
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 1.8e-37 160.2 155 53.5
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 1.8e-37 160.2 167 52.7
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 1.8e-37 160.2 158 57.0
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 3.1e-37 159.5 157 56.1
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 3.1e-37 159.5 156 53.2
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 3.1e-37 159.5 147 55.1
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 6.9e-37 158.3 161 50.3
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 6.9e-37 158.3 156 52.6
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 1.2e-36 157.5 166 49.4
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 3.4e-36 156.0 156 51.9
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 3.4e-36 156.0 156 51.9
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 3.4e-36 156.0 156 51.9
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 4.5e-36 155.6 157 53.5
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 5.9e-36 155.2 157 51.6
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 5.0e-35 152.1 145 51.7
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 8.5e-35 151.4 157 53.5
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 2.5e-34 149.8 167 50.9
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 1.6e-33 147.1 164 49.4
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 2.1e-33 146.7 150 54.0
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 2.1e-33 146.7 164 49.4
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.0e-32 144.4 164 48.8
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 1.0e-32 144.4 155 50.3
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 1.8e-32 143.7 157 54.8
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 3.9e-32 142.5 158 50.6
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 1.1e-31 141.0 150 50.0
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 4.1e-29 132.5 157 49.0
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 9.1e-29 131.3 159 46.5
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.2e-28 131.0 157 49.0
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 1.3e-27 127.5 156 45.5
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 1.7e-27 127.1 118 62.7
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 5.0e-27 125.6 159 47.8
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 8.5e-27 124.8 156 46.8
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 1.9e-26 123.6 161 47.2
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 5.5e-26 122.1 153 47.7
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 5.5e-26 122.1 153 47.7
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 5.5e-26 122.1 148 47.3
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 1.0e-24 117.9 155 46.5
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 1.4e-24 117.5 105 52.4
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 3.4e-15 86.3 113 48.7
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 3.4e-15 86.3 158 35.4
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 4.8e-14 82.4 154 37.7
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 1.1e-13 81.3 161 36.0
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 5.4e-13 79.0 153 32.7
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 2.2e-11 73.6 76 51.3
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 3.6e-09 66.2 123 39.8
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 5.2e-08 62.4 37 75.7
SEGI_31391 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 1.2e-07 61.2 114 33.3
Hund08538 Selenicereus undatus HOM05D005588 ORTHO05D006615 1.5e-07 60.8 42 69.0
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 2.6e-07 60.1 39 66.7


User provided reference genes

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