Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 1.2e-286 989.2 493 100.0
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 3.9e-194 681.8 487 73.5
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.8e-176 622.5 459 69.3
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.8e-176 622.5 459 69.3
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 4.1e-167 592.0 456 67.1
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 3.5e-166 589.0 433 68.6
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 1.1e-164 583.9 453 65.6
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 1.5e-164 583.6 454 66.1
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 2.1e-163 579.7 452 65.9
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 3.6e-163 578.9 456 66.2
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 8.0e-163 577.8 439 67.4
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 8.9e-162 574.3 445 66.3
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 1.2e-161 573.9 446 64.8
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 3.4e-161 572.4 432 67.1
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 4.4e-161 572.0 432 66.4
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 9.8e-161 570.9 451 64.1
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.3e-160 570.5 454 63.9
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 4.9e-160 568.5 432 65.7
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 4.9e-160 568.5 432 66.4
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 8.3e-160 567.8 445 64.3
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.1e-159 567.4 450 65.1
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 1.4e-159 567.0 436 66.1
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.4e-159 567.0 463 62.6
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 3.1e-159 565.8 464 62.5
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 3.1e-159 565.8 443 64.1
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 5.4e-159 565.1 434 65.9
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 5.4e-159 565.1 442 64.3
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 9.2e-159 564.3 438 65.3
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 9.2e-159 564.3 449 63.9
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 9.2e-159 564.3 433 66.3
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.2e-158 563.9 455 61.1
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 5.9e-158 561.6 447 63.8
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 7.8e-158 561.2 447 64.2
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.3e-157 560.5 438 64.8
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 2.3e-157 559.7 448 64.3
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 3.8e-157 558.9 453 62.3
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 6.6e-157 558.1 436 64.7
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.9e-156 556.6 432 65.3
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 2.5e-156 556.2 468 60.9
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 2.5e-156 556.2 436 65.1
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 3.3e-156 555.8 437 65.4
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 4.3e-156 555.4 434 65.0
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 9.5e-156 554.3 480 60.2
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.2e-155 553.9 455 62.6
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 2.8e-155 552.7 440 64.1
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 3.6e-155 552.4 442 62.9
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 4.7e-155 552.0 435 64.6
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 6.1e-155 551.6 442 63.3
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 6.1e-155 551.6 430 65.3
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 8.0e-155 551.2 441 63.3
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 8.0e-155 551.2 441 63.3
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 8.0e-155 551.2 431 65.7
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.8e-154 550.1 435 65.1
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.8e-154 550.1 433 65.4
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 3.0e-154 549.3 442 62.9
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 5.2e-154 548.5 432 64.6
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 6.8e-154 548.1 441 63.0
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 8.9e-154 547.7 441 63.5
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 8.9e-154 547.7 431 64.7
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 8.9e-154 547.7 467 61.0
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 8.9e-154 547.7 432 64.6
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 8.9e-154 547.7 440 63.6
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.0e-153 546.6 432 64.1
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 3.4e-153 545.8 443 64.3
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 4.4e-153 545.4 433 63.7
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 4.4e-153 545.4 436 64.2
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 5.8e-153 545.0 434 63.8
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 9.8e-153 544.3 439 63.1
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.8e-153 544.3 430 63.5
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.3e-152 543.9 441 62.6
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 2.2e-152 543.1 442 62.4
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 2.2e-152 543.1 440 62.7
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 2.9e-152 542.7 440 62.7
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 2.9e-152 542.7 430 64.4
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 2.9e-152 542.7 446 62.1
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 2.9e-152 542.7 456 60.5
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 2.9e-152 542.7 430 65.1
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 3.7e-152 542.3 442 62.9
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 4.9e-152 542.0 453 61.6
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 4.9e-152 542.0 446 62.3
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 6.4e-152 541.6 433 62.8
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 6.4e-152 541.6 440 62.5
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 6.4e-152 541.6 439 62.4
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 8.3e-152 541.2 457 61.9
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 2.4e-151 539.7 432 63.2
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 3.2e-151 539.3 430 64.9
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 2.7e-150 536.2 436 63.8
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 7.8e-150 534.6 505 55.4
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 1.0e-149 534.3 426 63.8
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.7e-149 533.5 430 63.3
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.7e-149 533.5 436 63.3
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 6.6e-149 531.6 448 60.7
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 1.5e-148 530.4 447 61.5
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 4.3e-148 528.9 430 63.0
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 5.6e-148 528.5 415 63.9
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 8.0e-147 524.6 443 62.3
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 5.2e-146 521.9 450 59.3
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 1.5e-145 520.4 433 61.0
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.6e-145 519.6 433 62.6
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 7.3e-140 501.5 430 58.4
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.2e-139 500.7 362 69.3
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 6.2e-139 498.4 440 59.5
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 8.9e-138 494.6 445 56.9
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 1.5e-137 493.8 445 59.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.4e-130 470.7 455 55.2
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.2e-126 457.6 428 55.1
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.6e-126 457.2 430 55.6
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 6.0e-126 455.3 428 55.4
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 1.0e-125 454.5 328 69.8
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 4.9e-120 435.6 440 54.5
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.0e-118 428.7 313 68.1
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 1.6e-115 420.6 437 50.3
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.1e-114 417.9 313 65.8
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.1e-114 416.4 370 60.3
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.1e-114 416.4 370 60.3
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 2.5e-108 396.7 434 49.5
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.4e-106 390.2 377 56.2
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 9.0e-106 388.3 493 46.0
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 9.3e-103 378.3 448 50.0
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.6e-102 377.5 290 63.4
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 2.9e-96 356.7 445 43.1
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 1.6e-94 350.9 317 59.0
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 4.6e-94 349.4 303 58.7
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.6e-86 324.3 176 86.9
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.3e-83 314.7 435 42.3
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 1.5e-81 307.8 437 41.4
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 1.4e-77 294.7 343 49.3
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 9.7e-76 288.5 295 53.2
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 2.2e-75 287.3 279 55.9
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 1.1e-71 275.0 213 66.7
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.6e-57 228.0 185 63.2
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 6.1e-54 216.1 115 86.1
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.4e-53 214.9 118 83.9
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 5.0e-48 196.4 249 45.8
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 2.0e-44 184.5 210 49.0
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 4.3e-39 166.8 94 81.9
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.2e-33 148.7 130 59.2
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 2.7e-33 147.5 324 34.9
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 5.4e-26 123.2 386 27.7
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 5.1e-24 116.7 81 74.1
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.6e-22 111.7 95 58.9
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.6e-15 85.9 247 31.6
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 1.2e-14 85.5 51 76.5
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 3.4e-12 77.4 45 80.0
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 9.9e-12 75.9 41 80.5
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.4e-10 72.0 145 35.2


User provided reference genes

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