Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 0.0e+00 1125.5 551 100.0
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.6e-265 919.1 551 83.5
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.5e-239 832.8 554 75.1
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.5e-239 832.8 554 75.1
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.1e-232 810.1 556 73.9
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.8e-219 766.1 547 71.3
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 8.8e-211 737.3 554 69.3
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.7e-193 678.7 553 63.1
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.7e-190 669.8 554 63.0
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.3e-189 665.2 571 62.3
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.2e-188 663.7 555 62.3
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 4.4e-186 655.2 539 64.7
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.1e-184 650.6 557 60.7
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.0e-182 644.0 553 61.1
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 2.5e-181 639.4 557 61.0
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 9.5e-181 637.5 552 61.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.6e-180 636.7 553 61.7
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 2.8e-180 636.0 555 61.6
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 2.3e-179 632.9 555 62.2
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 7.5e-178 627.9 553 60.6
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 9.8e-178 627.5 554 61.2
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.4e-176 623.6 554 60.5
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.4e-176 623.6 554 60.5
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 4.1e-176 622.1 558 60.2
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 7.8e-175 617.8 554 60.6
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 7.8e-175 617.8 554 59.7
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 7.8e-175 617.8 556 58.3
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.7e-174 616.7 558 60.4
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.0e-174 615.9 553 60.0
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.0e-174 615.9 555 60.4
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 5.1e-174 615.1 560 59.8
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 6.6e-174 614.8 563 59.1
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.1e-173 614.0 554 59.0
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.1e-173 614.0 553 59.0
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 9.5e-173 610.9 555 58.4
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 5.2e-171 605.1 553 57.0
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.6e-170 602.8 558 56.8
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 3.4e-170 602.4 554 60.6
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 9.9e-170 600.9 549 59.0
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.7e-169 600.1 558 57.5
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 3.2e-168 595.9 553 56.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 7.1e-168 594.7 555 58.0
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.2e-167 594.0 552 56.5
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 2.1e-167 593.2 553 56.2
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 2.5e-165 586.3 554 54.5
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.6e-164 583.6 555 56.8
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 6.2e-164 581.6 557 56.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.2e-162 577.4 561 57.8
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.5e-162 577.0 570 54.0
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.8e-161 572.4 551 54.6
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 8.4e-161 571.2 557 56.2
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 8.4e-161 571.2 554 53.4
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.9e-160 570.1 575 54.3
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 3.2e-160 569.3 559 55.6
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 2.1e-159 566.6 559 55.1
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 4.8e-156 555.4 572 53.1
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 6.2e-156 555.1 576 53.8
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 8.1e-156 554.7 548 56.2
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.1e-155 554.3 553 54.6
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.4e-155 553.9 562 55.0
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.2e-154 550.8 551 51.5
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.7e-153 547.0 547 55.8
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 4.9e-153 545.4 555 53.2
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.9e-152 543.5 573 52.7
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 3.2e-152 542.7 553 51.7
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.2e-151 540.8 550 53.3
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.1e-151 540.0 500 58.6
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.0e-150 537.7 551 52.5
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 3.0e-150 536.2 554 50.9
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 5.6e-149 531.9 551 52.5
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.3e-148 530.8 554 50.9
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.7e-148 529.3 551 55.2
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 8.1e-148 528.1 551 52.5
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 8.1e-148 528.1 551 52.1
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.5e-146 523.9 555 49.5
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 1.7e-145 520.4 555 50.6
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.2e-143 514.2 558 50.0
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 2.1e-143 513.5 557 48.5
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 6.7e-142 508.4 563 49.2
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 8.7e-142 508.1 555 47.9
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-141 507.7 557 48.7
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.1e-141 507.7 555 47.9
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 3.3e-141 506.1 554 48.6
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.3e-141 505.8 571 49.2
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 5.6e-141 505.4 561 48.8
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 7.4e-141 505.0 557 48.7
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.3e-140 504.2 552 48.4
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.4e-139 500.7 559 48.5
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.4e-139 500.7 511 55.0
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.8e-139 500.4 557 48.3
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-138 497.7 556 47.8
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 3.4e-138 496.1 556 47.7
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 4.9e-137 492.3 562 48.0
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 9.3e-136 488.0 560 46.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 8.7e-134 481.5 551 51.0
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 3.7e-132 476.1 572 47.2
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 5.9e-130 468.8 541 47.9
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 7.6e-130 468.4 541 47.0
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.3e-129 467.6 510 49.6
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.8e-124 449.9 539 47.9
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 8.2e-124 448.4 560 46.4
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.9e-122 442.2 551 47.9
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.0e-121 441.4 554 44.4
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.8e-118 430.6 563 44.2
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 6.9e-115 418.7 555 45.2
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 9.1e-115 418.3 593 43.3
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 4.5e-114 416.0 555 45.2
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.5e-112 410.2 557 42.4
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 7.2e-112 408.7 552 44.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.0e-110 404.8 556 41.2
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.2e-110 402.5 539 44.7
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 8.8e-110 401.7 550 42.9
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 9.7e-109 398.3 447 48.8
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.4e-107 394.4 562 42.7
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 3.1e-107 393.3 564 42.2
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 6.1e-103 379.0 530 42.3
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 7.2e-96 355.5 563 39.4
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-90 337.4 544 38.8
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 7.7e-90 335.5 498 41.2
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-89 334.0 544 38.1
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.2e-88 328.9 501 38.5
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.7e-87 326.2 501 38.9
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-87 325.5 558 38.4
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.5e-85 321.2 583 36.9
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 8.0e-79 298.9 536 36.0
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.5e-64 248.8 499 34.9
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.5e-64 248.8 499 34.9
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.4e-60 236.1 378 39.7
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.0e-57 228.8 553 30.2
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 2.3e-57 227.6 288 46.2
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.2e-53 215.3 311 43.7
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 5.4e-51 206.5 396 34.6
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 3.3e-48 197.2 143 69.2
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.6e-47 194.9 158 61.4
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 9.0e-38 162.5 573 25.1
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.9e-35 154.8 502 27.9
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.5e-34 150.6 570 25.3
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 3.9e-33 147.1 550 26.4
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 6.9e-30 136.3 451 27.3
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 9.9e-29 132.5 480 27.1
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.3e-20 105.5 66 72.7
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 6.5e-20 103.2 478 22.0
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 4.2e-19 100.5 123 43.9
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 4.2e-19 100.5 527 23.1
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 5.5e-19 100.1 83 59.0
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.1e-19 99.8 326 31.6
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 3.0e-17 94.4 56 66.1
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 8.7e-17 92.8 55 78.2
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 9.0e-14 82.8 187 28.9
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-12 79.0 81 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 2.2e-12 78.2 132 33.3
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.1e-11 75.9 87 41.4
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.2e-10 72.4 176 31.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.6e-10 70.9 416 21.6
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.5e-08 65.5 61 44.3


User provided reference genes

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