Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12210 Vaccinium macrocarpon HOM05D002959 ORTHO05D003237 2.8e-36 154.8 83 100.0
Rhsim06G0160800 Rhododendron simsii HOM05D002959 ORTHO05D003237 7.7e-18 93.6 60 80.0
Hma1.2p1_0948F.1_g240420 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 1.0e-17 93.2 59 78.0
Hma1.2p1_1768F.1_g301525 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 1.0e-17 93.2 59 78.0
Dinv39701 Davidia involucrata HOM05D002959 ORTHO05D003237 3.2e-16 88.2 58 74.1
Cfa014417 Carpinus fangiana HOM05D002959 ORTHO05D003237 7.2e-16 87.0 60 78.3
Haze_12877 Corylus avellana HOM05D002959 ORTHO05D003237 7.2e-16 87.0 61 75.4
CSS0017236 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 9.4e-16 86.7 58 77.6
Nitab4.5_0002137g0130 Nicotiana tabacum HOM05D002959 ORTHO05D003237 1.2e-15 86.3 59 71.2
Dinv05448 Davidia involucrata HOM05D002959 ORTHO05D003237 2.1e-15 85.5 63 68.3
HanXRQChr15g0496411 Helianthus annuus HOM05D002959 ORTHO05D003237 6.1e-15 84.0 59 72.9
Nitab4.5_0009026g0020 Nicotiana tabacum HOM05D002959 ORTHO05D003237 8.0e-15 83.6 59 71.2
QL08p033321 Quercus lobata HOM05D002959 ORTHO05D003237 8.0e-15 83.6 59 71.2
DCAR_012948 Daucus carota HOM05D002959 ORTHO05D003237 1.0e-14 83.2 59 67.8
CAN.G846.4 Capsicum annuum HOM05D002959 ORTHO05D003237 1.4e-14 82.8 59 69.5
ECA233G6126 Erigeron canadensis HOM05D002959 ORTHO05D003237 2.3e-14 82.0 59 71.2
Lj1A759T41 Lonicera japonica HOM05D002959 ORTHO05D003237 2.3e-14 82.0 59 67.8
Lj1A760T25 Lonicera japonica HOM05D002959 ORTHO05D003237 2.3e-14 82.0 59 67.8
Sopen07g026060 Solanum pennellii HOM05D002959 ORTHO05D003237 4.0e-14 81.3 59 69.5
PGSC0003DMG400025496 Solanum tuberosum HOM05D002959 ORTHO05D003237 5.2e-14 80.9 59 71.2
PGSC0003DMG400025497 Solanum tuberosum HOM05D002959 ORTHO05D003237 6.8e-14 80.5 59 69.5
CiPaw.03G161200 Carya illinoinensis HOM05D002959 ORTHO05D003237 8.8e-14 80.1 59 74.6
Solyc07g052430.3 Solanum lycopersicum HOM05D002959 ORTHO05D003237 8.8e-14 80.1 59 67.8
CANSAT64G0672 Cannabis sativa HOM05D002959 ORTHO05D003237 1.2e-13 79.7 60 73.3
Lsat_1_v5_gn_8_128621 Lactuca sativa HOM05D002959 ORTHO05D003237 1.2e-13 79.7 58 70.7
Solyc07g052440.3 Solanum lycopersicum HOM05D002959 ORTHO05D003237 1.2e-13 79.7 59 69.5
ECA233G1396 Erigeron canadensis HOM05D002959 ORTHO05D003237 2.0e-13 79.0 58 63.8
Actinidia09710 Actinidia chinensis HOM05D002959 ORTHO05D003237 2.6e-13 78.6 59 71.2
Sopen07g026070 Solanum pennellii HOM05D002959 ORTHO05D003237 2.6e-13 78.6 59 67.8
CAN.G846.3 Capsicum annuum HOM05D002959 ORTHO05D003237 3.4e-13 78.2 59 66.1
Manes.12G075500 Manihot esculenta HOM05D002959 ORTHO05D003237 5.7e-13 77.4 59 69.5
Hma1.2p1_1768F.1_g301560 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 7.5e-13 77.0 59 71.2
Manes.13G070900 Manihot esculenta HOM05D002959 ORTHO05D003237 7.5e-13 77.0 57 64.9
Peaxi162Scf00007g00929 Petunia axillaris HOM05D002959 ORTHO05D003237 7.5e-13 77.0 59 64.4
AUR62025051 Chenopodium quinoa HOM05D002959 ORTHO05D003237 1.3e-12 76.3 58 67.2
TPR.G4665 Trifolium pratense HOM05D002959 ORTHO05D003237 1.3e-12 76.3 64 67.2
CANSAT64G1461 Cannabis sativa HOM05D002959 ORTHO05D003237 1.7e-12 75.9 65 63.1
Oeu041931.2 Olea europaea HOM05D002959 ORTHO05D003237 1.7e-12 75.9 63 61.9
CAN.G846.2 Capsicum annuum HOM05D002959 ORTHO05D003237 2.2e-12 75.5 59 64.4
Hma1.2p1_0328F.1_g126800 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 2.2e-12 75.5 59 64.4
unitig_699.g19615 Utricularia gibba HOM05D000109 ORTHO05D003237 2.2e-12 75.5 59 61.0
Duzib251G0741 Durio zibethinus HOM05D002959 ORTHO05D003237 2.8e-12 75.1 58 63.8
PGR042G1226 Punica granatum HOM05D002959 ORTHO05D003237 2.8e-12 75.1 57 66.7
Thecc.02G313300 Theobroma cacao HOM05D002959 ORTHO05D003237 2.8e-12 75.1 59 67.8
TPR.G23666 Trifolium pratense HOM05D002959 ORTHO05D003237 3.7e-12 74.7 64 65.6
MSTRG.6556 Avicennia marina HOM05D002959 ORTHO05D003237 4.8e-12 74.3 59 62.7
Medtr4g047630 Medicago truncatula HOM05D002959 ORTHO05D003237 6.3e-12 73.9 64 64.1
Prupe.3G218400 Prunus persica HOM05D002959 ORTHO05D003237 8.3e-12 73.6 60 66.7
Eucgr.A01714 Eucalyptus grandis HOM05D002959 ORTHO05D003237 1.1e-11 73.2 60 65.0
Nn1g03594 Nelumbo nucifera HOM05D002959 ORTHO05D003237 1.1e-11 73.2 59 62.7
Gohir.A03G109000 Gossypium hirsutum HOM05D002959 ORTHO05D003237 1.4e-11 72.8 58 60.3
Gohir.D02G134100 Gossypium hirsutum HOM05D002959 ORTHO05D003237 1.4e-11 72.8 58 60.3
Lj3g0006213 Lotus japonicus HOM05D002959 ORTHO05D003237 1.4e-11 72.8 64 60.9
Cc05_g04870 Coffea canephora HOM05D002959 ORTHO05D003237 1.8e-11 72.4 63 58.7
Sc21g0001590 Simmondsia chinensis HOM05D002959 ORTHO05D003237 2.4e-11 72.0 61 59.0
Cpa.g.sc4.170 Carica papaya HOM05D002959 ORTHO05D003237 3.1e-11 71.6 60 61.7
arahy.Tifrunner.gnm1.ann1.18208U Arachis hypogaea HOM05D002959 ORTHO05D003237 4.1e-11 71.2 62 61.3
arahy.Tifrunner.gnm1.ann1.X4J0KT Arachis hypogaea HOM05D002959 ORTHO05D003237 4.1e-11 71.2 62 61.3
AUR62037134 Chenopodium quinoa HOM05D002959 ORTHO05D003237 5.4e-11 70.9 47 74.5
RcHm_v2.0_Chr2g0159721 Rosa chinensis HOM05D002959 ORTHO05D003237 5.4e-11 70.9 60 63.3
COL.COLO4_27698 Corchorus olitorius HOM05D002959 ORTHO05D003237 7.0e-11 70.5 58 63.8
Gorai.005G150000 Gossypium raimondii HOM05D002959 ORTHO05D003237 7.0e-11 70.5 58 58.6
TWI36G0566 Tripterygium wilfordii HOM05D002959 ORTHO05D003237 7.0e-11 70.5 62 61.3
Migut.M00412 Erythranthe guttata HOM05D002959 ORTHO05D003237 9.1e-11 70.1 58 62.1
Hma1.2p1_1768F.1_g301570 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 9.1e-11 70.1 58 60.3
MD17G1095200 Malus domestica HOM05D002959 ORTHO05D003237 9.1e-11 70.1 57 66.7
Psat7g158640 Pisum sativum HOM05D002959 ORTHO05D003237 9.1e-11 70.1 64 62.5
Duzib065G0003 Durio zibethinus HOM05D002959 ORTHO05D003237 1.2e-10 69.7 58 58.6
MD17G1095300 Malus domestica HOM05D002959 ORTHO05D003237 1.2e-10 69.7 60 63.3
Atru.chr6.3170 Acer truncatum HOM05D002959 ORTHO05D003237 2.0e-10 68.9 64 56.2
AL4G27750 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 2.0e-10 68.9 60 65.0
AT2G32380 Arabidopsis thaliana HOM05D002959 ORTHO05D003237 2.0e-10 68.9 60 65.0
Carub.0001s0449 Capsella rubella HOM05D002959 ORTHO05D003237 2.0e-10 68.9 58 60.3
VMungo1127G2165 Vigna mungo HOM05D002959 ORTHO05D003237 2.7e-10 68.6 64 62.5
EL10Ac9g20667 Beta vulgaris HOM05D002959 ORTHO05D003237 3.5e-10 68.2 58 58.6
Ca_26237_v3 Cicer arietinum L. HOM05D002959 ORTHO05D003237 3.5e-10 68.2 64 60.9
Thecc.02G313100 Theobroma cacao HOM05D002959 ORTHO05D003237 3.5e-10 68.2 59 59.3
AL1G14980 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 4.5e-10 67.8 58 58.6
Duzib268G0859 Durio zibethinus HOM05D002959 ORTHO05D003237 4.5e-10 67.8 60 63.3
Sp4g14750 Schrenkiella parvula HOM05D002959 ORTHO05D003237 5.9e-10 67.4 60 61.7
Aa31LG1G19530 Aethionema arabicum HOM05D002959 ORTHO05D003237 7.7e-10 67.0 57 63.2
AT1G05210 Arabidopsis thaliana HOM05D002959 ORTHO05D003237 7.7e-10 67.0 58 56.9
COL.COLO4_27696 Corchorus olitorius HOM05D002959 ORTHO05D003237 1.0e-09 66.6 58 58.6
THA.LOC104800984 Tarenaya hassleriana HOM05D002959 ORTHO05D003237 1.0e-09 66.6 64 59.4
TWI36G0789 Tripterygium wilfordii HOM05D002959 ORTHO05D003237 1.0e-09 66.6 62 58.1
TAR626G0389 Trochodendron aralioides HOM05D002959 ORTHO05D003237 1.0e-09 66.6 60 58.3
AL4G27760 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 1.3e-09 66.2 60 61.7
Carub.0004s1373 Capsella rubella HOM05D002959 ORTHO05D003237 1.3e-09 66.2 60 63.3
Thhalv10017325m.g Eutrema salsugineum HOM05D002959 ORTHO05D003237 1.3e-09 66.2 60 61.7
FvH4_6g43380 Fragaria vesca HOM05D002959 ORTHO05D003237 1.3e-09 66.2 60 60.0
FAN14G2056 Fragaria x ananassa HOM05D002959 ORTHO05D003237 1.3e-09 66.2 60 60.0
Potri.009G117800 Populus trichocarpa HOM05D002959 ORTHO05D003237 1.3e-09 66.2 63 57.1
A10p03750 Brassica napus HOM05D002959 ORTHO05D003237 1.7e-09 65.9 58 58.6
C05p03450 Brassica napus HOM05D002959 ORTHO05D003237 1.7e-09 65.9 58 58.6
BolC5t29124H Brassica oleracea HOM05D002959 ORTHO05D003237 1.7e-09 65.9 58 58.6
Ciclev10016979m.g Citrus clementina HOM05D002959 ORTHO05D003237 1.7e-09 65.9 60 56.7
COL.COLO4_27691 Corchorus olitorius HOM05D002959 ORTHO05D003237 1.7e-09 65.9 58 58.6
FAN02G0167 Fragaria x ananassa HOM05D002959 ORTHO05D003237 1.7e-09 65.9 60 58.3
FAN05G3149 Fragaria x ananassa HOM05D002959 ORTHO05D003237 1.7e-09 65.9 60 58.3
FAN09G0349 Fragaria x ananassa HOM05D002959 ORTHO05D003237 1.7e-09 65.9 60 58.3
TWI36G0391 Tripterygium wilfordii HOM05D002959 ORTHO05D003237 1.7e-09 65.9 59 57.6
Aqoxy1G03306 Aquilegia oxysepala HOM05D002959 ORTHO05D003237 2.2e-09 65.5 60 61.7
BraA10t42648Z Brassica rapa HOM05D002959 ORTHO05D003237 2.2e-09 65.5 58 56.9
Phvul.011G104500 Phaseolus vulgaris HOM05D002959 ORTHO05D003237 2.2e-09 65.5 64 57.8
TAR626G1024 Trochodendron aralioides HOM05D002959 ORTHO05D003237 2.2e-09 65.5 59 57.6
MD17G1095500 Malus domestica HOM05D002959 ORTHO05D003237 2.9e-09 65.1 60 58.3
CARHR126200 Cardamine hirsuta HOM05D002959 ORTHO05D003237 3.8e-09 64.7 60 60.0
Ah.01g014550 Amaranthus hybridus HOM05D002959 ORTHO05D003237 5.0e-09 64.3 58 55.2
CsaV3_7G003690 Cucumis sativus L. HOM05D002959 ORTHO05D003237 5.0e-09 64.3 58 55.2
Glyma.12G099900 Glycine max HOM05D002959 ORTHO05D003237 5.0e-09 64.3 60 61.7
A08p36530 Brassica napus HOM05D002959 ORTHO05D003237 8.5e-09 63.5 58 55.2
CARHR004690 Cardamine hirsuta HOM05D002959 ORTHO05D003237 8.5e-09 63.5 50 70.0
COL.COLO4_27693 Corchorus olitorius HOM05D002959 ORTHO05D003237 8.5e-09 63.5 58 55.2
Prupe.3G218100 Prunus persica HOM05D002959 ORTHO05D003237 8.5e-09 63.5 61 55.7
Sabra09G0090200 Salix brachista HOM05D002959 ORTHO05D003237 8.5e-09 63.5 63 52.4
Sed0004815 Sechium edule HOM05D002959 ORTHO05D003237 8.5e-09 63.5 58 53.4
Gohir.A12G157100 Gossypium hirsutum HOM05D002959 ORTHO05D003237 1.1e-08 63.2 60 53.3
Gohir.D12G160000 Gossypium hirsutum HOM05D002959 ORTHO05D003237 1.1e-08 63.2 60 53.3
Gorai.008G173100 Gossypium raimondii HOM05D002959 ORTHO05D003237 1.1e-08 63.2 60 53.3
Prupe.3G218200 Prunus persica HOM05D002959 ORTHO05D003237 1.1e-08 63.2 61 55.7
Sp1g04070 Schrenkiella parvula HOM05D002959 ORTHO05D003237 1.1e-08 63.2 43 69.8
SpUn0024_0070 Schrenkiella parvula HOM05D002959 ORTHO05D003237 1.1e-08 63.2 43 69.8
BraA08t35554Z Brassica rapa HOM05D002959 ORTHO05D003237 1.5e-08 62.8 58 55.2
COL.COLO4_27690 Corchorus olitorius HOM05D002959 ORTHO05D003237 1.5e-08 62.8 58 55.2
MELO3C018810.2 Cucumis melo HOM05D002959 ORTHO05D003237 1.9e-08 62.4 59 57.6
Thhalv10008934m.g Eutrema salsugineum HOM05D002959 ORTHO05D003237 1.9e-08 62.4 58 55.2
C08p01810 Brassica napus HOM05D002959 ORTHO05D003237 2.5e-08 62.0 58 55.2
BolC8t46981H Brassica oleracea HOM05D002959 ORTHO05D003237 2.5e-08 62.0 58 55.2
COL.COLO4_27697 Corchorus olitorius HOM05D002959 ORTHO05D003237 3.2e-08 61.6 60 56.7
ClCG02G001850 Citrullus lanatus HOM05D002959 ORTHO05D003237 4.2e-08 61.2 58 53.4
Duzib268G1581 Durio zibethinus HOM05D002959 ORTHO05D003237 4.2e-08 61.2 55 54.5
Glyma.06G303800 Glycine max HOM05D002959 ORTHO05D003237 4.2e-08 61.2 60 60.0
BcaC07g36857 Brassica carinata HOM05D002959 ORTHO05D003237 5.5e-08 60.8 58 53.4
CSS0016007 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 5.5e-08 60.8 59 50.8
CSS0022732 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 5.5e-08 60.8 59 50.8
Dinv05451 Davidia involucrata HOM05D002959 ORTHO05D003237 5.5e-08 60.8 50 58.0
ECA233G3122 Erigeron canadensis HOM05D000906 ORTHO05D000713 5.5e-08 60.8 42 71.4
HanXRQChr15g0496401 Helianthus annuus HOM05D002959 ORTHO05D003237 7.2e-08 60.5 59 57.6
CSS0001025 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 1.6e-07 59.3 59 50.8
CSS0034965 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 2.1e-07 58.9 59 50.8
CSS0045723 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 2.1e-07 58.9 59 50.8
CAN.G846.1 Capsicum annuum HOM05D002959 ORTHO05D003237 2.1e-07 58.9 59 55.9
COL.COLO4_27694 Corchorus olitorius HOM05D002959 ORTHO05D003237 2.1e-07 58.9 58 51.7
Duzib251G0878 Durio zibethinus HOM05D002959 ORTHO05D003237 2.1e-07 58.9 60 58.3
MBI18_g10793_MAGBIO Magnolia biondii HOM05D002959 ORTHO05D003237 2.1e-07 58.9 63 54.0
MD09G1107600 Malus domestica HOM05D002959 ORTHO05D003237 2.1e-07 58.9 61 52.5
MD17G1095800 Malus domestica HOM05D002959 ORTHO05D003237 2.1e-07 58.9 61 52.5
FvH4_6g43330 Fragaria vesca HOM05D002959 ORTHO05D003237 2.7e-07 58.5 63 50.8
GSVIVG01030603001 Vitis vinifera HOM05D002959 ORTHO05D003237 3.6e-07 58.2 59 54.2
Zm00001eb305670 Zea mays HOM05D002959 ORTHO05D003237 3.6e-07 58.2 58 55.2
FvH4_6g43370 Fragaria vesca HOM05D002959 ORTHO05D003237 4.7e-07 57.8 59 52.5
MD17G1095600 Malus domestica HOM05D002959 ORTHO05D003237 4.7e-07 57.8 49 61.2
CSS0046576 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 6.1e-07 57.4 59 49.2
Lalb_Chr03g0028761 Lupinus albus HOM05D002959 ORTHO05D003237 6.1e-07 57.4 60 56.7
RcHm_v2.0_Chr2g0159661 Rosa chinensis HOM05D002959 ORTHO05D003237 6.1e-07 57.4 63 49.2
FAN09G2165 Fragaria x ananassa HOM05D002959 ORTHO05D003237 1.0e-06 56.6 61 49.2
CSS0025283 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 1.4e-06 56.2 59 50.8
RcHm_v2.0_Chr5g0040271 Rosa chinensis HOM05D001706 ORTHO05D003237 1.4e-06 56.2 53 60.4
CSS0023857 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 2.3e-06 55.5 60 50.0
COL.COLO4_27692 Corchorus olitorius HOM05D002959 ORTHO05D003237 3.0e-06 55.1 58 51.7
Cc05_g04880 Coffea canephora HOM05D002959 ORTHO05D003237 4.0e-06 54.7 56 51.8
FAN01G1417 Fragaria x ananassa HOM05D002959 ORTHO05D020612 4.0e-06 54.7 59 47.5
FAN06G3240 Fragaria x ananassa HOM05D002959 ORTHO05D003237 6.8e-06 53.9 58 48.3
PSO541G0978 Papaver somniferum HOM05D002959 ORTHO05D003237 6.8e-06 53.9 59 49.2
CsaV3_4G005160 Cucumis sativus L. HOM05D002959 ORTHO05D003237 8.8e-06 53.5 60 48.3


User provided reference genes

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