Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 7.3e-46 186.8 91 100.0
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 2.9e-26 121.7 77 77.9
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 2.7e-24 115.2 75 74.7
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 5.7e-22 107.5 74 68.9
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 5.7e-22 107.5 74 68.9
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 6.9e-20 100.5 71 69.0
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 1.2e-19 99.8 74 60.8
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 5.9e-19 97.4 65 70.8
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 8.5e-18 93.6 67 65.7
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 3.2e-17 91.7 64 68.8
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 4.2e-17 91.3 68 64.7
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 7.2e-17 90.5 68 64.7
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 1.6e-16 89.4 84 57.1
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 4.6e-16 87.8 66 60.6
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 1.4e-15 86.3 66 62.1
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 3.9e-15 84.7 59 62.7
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 6.7e-15 84.0 66 60.6
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 6.7e-15 84.0 82 51.2
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 6.7e-15 84.0 72 58.3
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 8.8e-15 83.6 71 57.7
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-14 83.2 60 61.7
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.9e-14 82.4 46 78.3
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 4.3e-14 81.3 42 81.0
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 5.7e-14 80.9 99 46.5
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 7.4e-14 80.5 79 53.2
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 9.7e-14 80.1 70 62.9
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 4.8e-13 77.8 76 52.6
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 8.2e-13 77.0 82 47.6
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 8.2e-13 77.0 82 47.6
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 1.1e-12 76.6 81 50.6
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 1.1e-12 76.6 67 58.2
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 1.4e-12 76.3 83 45.8
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 1.4e-12 76.3 82 47.6
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.4e-12 76.3 80 51.2
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.4e-12 75.5 86 51.2
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 4.1e-12 74.7 42 71.4
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 4.1e-12 74.7 93 48.4
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 5.3e-12 74.3 68 52.9
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 5.3e-12 74.3 68 52.9
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 5.3e-12 74.3 80 48.8
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 9.1e-12 73.6 73 49.3
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 9.1e-12 73.6 93 48.4
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 1.2e-11 73.2 86 48.8
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 1.2e-11 73.2 93 48.4
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 1.5e-11 72.8 78 47.4
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.5e-11 72.8 68 51.5
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 1.5e-11 72.8 87 44.8
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 2.0e-11 72.4 72 48.6
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 2.0e-11 72.4 45 75.6
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 2.0e-11 72.4 79 46.8
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 3.4e-11 71.6 68 50.0
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 4.5e-11 71.2 96 43.8
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 4.5e-11 71.2 67 53.7
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 7.7e-11 70.5 36 83.3
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 7.7e-11 70.5 78 47.4
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 1.0e-10 70.1 83 45.8
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.3e-10 69.7 64 54.7
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.3e-10 69.7 64 54.7
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.7e-10 69.3 68 58.8
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.7e-10 69.3 68 58.8
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.7e-10 69.3 36 75.0
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 1.7e-10 69.3 64 57.8
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.7e-10 69.3 65 55.4
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 2.2e-10 68.9 47 63.8
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 2.2e-10 68.9 83 43.4
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 3.8e-10 68.2 68 50.0
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 5.0e-10 67.8 83 42.2
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 6.5e-10 67.4 49 65.3
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 6.5e-10 67.4 91 40.7
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 8.5e-10 67.0 59 54.2
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 8.5e-10 67.0 36 77.8
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 1.1e-09 66.6 58 53.4
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 1.1e-09 66.6 36 72.2
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 1.4e-09 66.2 67 49.3
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 1.4e-09 66.2 67 49.3
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.4e-09 66.2 71 46.5
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 3.2e-09 65.1 33 78.8
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 4.2e-09 64.7 55 54.5
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.2e-09 64.7 45 60.0
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.2e-09 64.7 45 60.0
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 5.5e-09 64.3 51 54.9
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 7.2e-09 63.9 34 73.5
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 7.2e-09 63.9 34 73.5
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 9.4e-09 63.5 68 48.5
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 9.4e-09 63.5 56 55.4
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 9.4e-09 63.5 45 60.0
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 1.2e-08 63.2 45 60.0
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.6e-08 62.8 35 71.4
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 4.7e-08 61.2 40 65.0
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.0e-07 60.1 68 48.5
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 1.4e-07 59.7 57 52.6
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 6.7e-07 57.4 44 56.8
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.1e-06 56.6 61 50.8
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 5.7e-06 54.3 36 66.7
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 7.4e-06 53.9 42 61.9
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 9.7e-06 53.5 42 59.5
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 9.7e-06 53.5 34 67.6


User provided reference genes

Program Settings