Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12144 Vaccinium macrocarpon HOM05D006530 ORTHO05D008283 0.0e+00 1366.7 753 100.0
Rhsim06G0169800 Rhododendron simsii HOM05D006530 ORTHO05D008283 1.1e-256 890.2 766 67.2
CSS0049970 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 6.8e-206 721.5 814 54.7
CSS0002282 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 3.8e-204 715.7 814 54.3
Cfa014298 Carpinus fangiana HOM05D006530 ORTHO05D008283 1.6e-178 630.6 796 49.7
Hma1.2p1_0445F.1_g154110 Hydrangea macrophylla HOM05D006530 ORTHO05D008283 7.9e-178 628.2 780 51.0
Thecc.01G184900 Theobroma cacao HOM05D006530 ORTHO05D008283 1.3e-175 620.9 816 47.5
Duzib133G1057 Durio zibethinus HOM05D006530 ORTHO05D008283 3.7e-175 619.4 816 47.8
Atru.chr6.3278 Acer truncatum HOM05D006530 ORTHO05D008283 8.2e-175 618.2 826 47.6
Atru.chr6.3294 Acer truncatum HOM05D006530 ORTHO05D008283 8.2e-175 618.2 827 47.6
Haze_12746 Corylus avellana HOM05D006530 ORTHO05D008283 1.4e-174 617.5 784 49.5
Gorai.001G218200 Gossypium raimondii HOM05D006530 ORTHO05D008283 1.4e-171 607.4 794 48.5
Ciclev10014523m.g Citrus clementina HOM05D006530 ORTHO05D008283 2.5e-171 606.7 805 49.2
Actinidia09758 Actinidia chinensis HOM05D006530 ORTHO05D008283 1.2e-170 604.4 805 50.3
COL.COLO4_32787 Corchorus olitorius HOM05D006530 ORTHO05D008283 3.0e-169 599.7 783 48.1
Gohir.A07G188400 Gossypium hirsutum HOM05D006530 ORTHO05D008283 2.2e-167 593.6 794 47.6
QL08p029933 Quercus lobata HOM05D006530 ORTHO05D008283 3.7e-167 592.8 836 47.2
Dinv08706 Davidia involucrata HOM05D006530 ORTHO05D008283 2.4e-166 590.1 729 51.6
MD09G1117000 Malus domestica HOM05D006530 ORTHO05D008283 3.1e-166 589.7 786 48.9
Prupe.3G206900 Prunus persica HOM05D006530 ORTHO05D008283 3.1e-166 589.7 847 45.8
Gohir.D07G195000 Gossypium hirsutum HOM05D006530 ORTHO05D008283 2.0e-165 587.0 794 46.9
FvH4_6g41820 Fragaria vesca HOM05D006530 ORTHO05D008283 1.7e-164 583.9 798 46.9
Aqoxy1G02869 Aquilegia oxysepala HOM05D006530 ORTHO05D008283 1.4e-163 580.9 818 45.7
TAR624G0329 Trochodendron aralioides HOM05D006530 ORTHO05D008283 2.7e-162 576.6 847 44.4
Nn1g03345 Nelumbo nucifera HOM05D006530 ORTHO05D008283 3.6e-162 576.2 849 44.6
FAN09G3579 Fragaria x ananassa HOM05D006530 ORTHO05D008283 7.9e-162 575.1 799 46.2
RcHm_v2.0_Chr2g0157621 Rosa chinensis HOM05D006530 ORTHO05D008283 2.0e-160 570.5 806 45.3
DCAR_019250 Daucus carota HOM05D006530 ORTHO05D008283 1.8e-158 563.9 781 47.0
Lj1A785T50 Lonicera japonica HOM05D006530 ORTHO05D008283 1.8e-158 563.9 800 48.0
Cpa.g.sc132.47 Carica papaya HOM05D006530 ORTHO05D008283 2.0e-157 560.5 773 46.6
Manes.12G056700 Manihot esculenta HOM05D006530 ORTHO05D008283 2.9e-156 556.6 871 44.0
TWI18G1412 Tripterygium wilfordii HOM05D006530 ORTHO05D008283 8.5e-156 555.1 793 45.9
Eucgr.K00730 Eucalyptus grandis HOM05D006530 ORTHO05D008283 2.1e-154 550.4 816 46.4
Lalb_Chr08g0236491 Lupinus albus HOM05D006530 ORTHO05D008283 1.0e-153 548.1 770 45.3
Glyma.20G058500 Glycine max HOM05D006530 ORTHO05D008283 5.2e-153 545.8 769 45.3
AUR62015107 Chenopodium quinoa HOM05D006530 ORTHO05D008283 9.7e-152 541.6 809 44.3
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 1.3e-151 541.2 814 44.7
PSO541G4152 Papaver somniferum HOM05D006530 ORTHO05D008283 6.3e-151 538.9 786 45.5
PGR142G2443 Punica granatum HOM05D006530 ORTHO05D008283 4.1e-150 536.2 871 42.8
AUR62017570 Chenopodium quinoa HOM05D006530 ORTHO05D008283 4.5e-149 532.7 801 42.9
Cc05_g02470 Coffea canephora HOM05D006530 ORTHO05D008283 7.7e-149 531.9 776 45.7
Phvul.006G013400 Phaseolus vulgaris HOM05D006530 ORTHO05D008283 1.0e-148 531.6 760 46.4
Sabra14G0122100 Salix brachista HOM05D006530 ORTHO05D008283 1.7e-148 530.8 806 45.0
CiPaw.03G274100 Carya illinoinensis HOM05D006530 ORTHO05D008283 8.5e-148 528.5 721 47.2
GSVIVG01030533001 Vitis vinifera HOM05D006530 ORTHO05D008283 1.9e-147 527.3 748 47.1
MSTRG.14123 Avicennia marina HOM05D006530 ORTHO05D008283 4.2e-147 526.2 778 45.2
MELO3C019717.2 Cucumis melo HOM05D006530 ORTHO05D008283 7.2e-147 525.4 816 42.4
THA.LOC104808864 Tarenaya hassleriana HOM05D006530 ORTHO05D008283 1.6e-146 524.2 782 43.9
Medtr3g082840 Medicago truncatula HOM05D006530 ORTHO05D008283 6.1e-146 522.3 767 43.9
Ca_16350_v3 Cicer arietinum L. HOM05D006530 ORTHO05D008283 1.0e-145 521.5 771 43.8
CsaV3_6G015570 Cucumis sativus L. HOM05D006530 ORTHO05D008283 1.8e-145 520.8 811 41.9
Migut.H01255 Erythranthe guttata HOM05D006530 ORTHO05D008283 1.2e-144 518.1 768 44.3
VMungo0540G0580 Vigna mungo HOM05D006530 ORTHO05D008283 1.5e-144 517.7 762 44.4
ECA236G0541 Erigeron canadensis HOM05D006530 ORTHO05D008283 1.3e-143 514.6 812 42.7
Psat5g104000 Pisum sativum HOM05D006530 ORTHO05D008283 1.3e-143 514.6 769 44.1
Peaxi162Scf00047g02037 Petunia axillaris HOM05D006530 ORTHO05D008283 4.8e-143 512.7 786 43.5
Nitab4.5_0000622g0140 Nicotiana tabacum HOM05D006530 ORTHO05D008283 1.4e-142 511.1 790 43.9
FAN14G2540 Fragaria x ananassa HOM05D006530 ORTHO05D008283 9.1e-142 508.4 798 43.2
arahy.Tifrunner.gnm1.ann1.KP8KK1 Arachis hypogaea HOM05D006530 ORTHO05D008283 3.5e-141 506.5 769 42.4
SalBow3G0397 Salvia bowleyana HOM05D006530 ORTHO05D008283 3.8e-140 503.1 770 42.5
CANSAT64G1714 Cannabis sativa HOM05D006530 ORTHO05D008283 1.1e-139 501.5 786 45.2
Oeu061995.2 Olea europaea HOM05D006530 ORTHO05D008283 1.1e-139 501.5 847 42.0
PGSC0003DMG400013890 Solanum tuberosum HOM05D006530 ORTHO05D008283 5.5e-139 499.2 786 42.6
Sopen12g001950 Solanum pennellii HOM05D006530 ORTHO05D008283 1.6e-138 497.7 780 43.1
arahy.Tifrunner.gnm1.ann1.B2HSRW Arachis hypogaea HOM05D006530 ORTHO05D008283 3.6e-138 496.5 768 42.2
CAN.G931.8 Capsicum annuum HOM05D006530 ORTHO05D008283 1.0e-137 495.0 797 43.2
Sp7g06570 Schrenkiella parvula HOM05D006530 ORTHO05D008283 1.4e-137 494.6 772 42.9
Lj6g0023666 Lotus japonicus HOM05D006530 ORTHO05D008283 2.3e-137 493.8 760 43.2
EL10Ac9g22807 Beta vulgaris HOM05D006530 ORTHO05D008283 4.0e-137 493.0 814 42.6
Aa31sc124G40 Aethionema arabicum HOM05D006530 ORTHO05D008283 2.6e-136 490.3 786 41.5
HanXRQChr16g0508331 Helianthus annuus HOM05D006530 ORTHO05D008283 1.7e-135 487.6 775 43.9
Os08g0500800 Oryza sativa ssp. japonica HOM05D006530 ORTHO05D008283 1.7e-135 487.6 811 41.4
Solyc12g005980.2 Solanum lycopersicum HOM05D006530 ORTHO05D008283 6.3e-135 485.7 778 42.5
SalBow1G8616 Salvia bowleyana HOM05D006530 ORTHO05D008283 8.3e-135 485.3 809 40.0
AT5G35690 Arabidopsis thaliana HOM05D006530 ORTHO05D008283 2.4e-134 483.8 772 41.6
Nitab4.5_0005875g0040 Nicotiana tabacum HOM05D006530 ORTHO05D008283 4.5e-133 479.6 775 43.2
Zm00001eb034180 Zea mays HOM05D006530 ORTHO05D008283 3.8e-132 476.5 777 41.1
AL7G44540 Arabidopsis lyrata HOM05D006530 ORTHO05D008283 3.2e-131 473.4 765 41.0
Hund24188 Selenicereus undatus HOM05D006530 ORTHO05D008283 1.2e-130 471.5 773 42.4
Sed0022132 Sechium edule HOM05D006530 ORTHO05D008283 3.6e-130 469.9 898 42.9
Carub.0007s3142 Capsella rubella HOM05D006530 ORTHO05D008283 6.1e-130 469.2 778 40.9
Thhalv10003827m.g Eutrema salsugineum HOM05D006530 ORTHO05D008283 1.4e-129 468.0 767 41.9
ATR1128G020 Amborella trichopoda HOM05D006530 ORTHO05D008283 1.8e-126 457.6 863 41.9
C04p43360 Brassica napus HOM05D006530 ORTHO05D008283 7.7e-125 452.2 755 41.1
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 1.7e-124 451.1 755 41.1
CARHR217000 Cardamine hirsuta HOM05D006530 ORTHO05D008283 1.7e-124 451.1 766 39.8
BolC4t25914H Brassica oleracea HOM05D006530 ORTHO05D008283 2.3e-124 450.7 755 40.9
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 2.5e-123 447.2 759 40.4
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 2.5e-123 447.2 759 40.4
FAN02G4367 Fragaria x ananassa HOM05D006530 ORTHO05D008283 9.5e-123 445.3 465 54.6
CDE10G0969 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 2.3e-121 440.7 845 37.4
Lsat_1_v5_gn_7_94721 Lactuca sativa HOM05D006530 ORTHO05D008283 7.8e-117 425.6 763 42.2
BcaB06g26968 Brassica carinata HOM05D006530 ORTHO05D008283 6.6e-116 422.5 762 38.8
unitig_26.g9922 Utricularia gibba HOM05D006530 ORTHO05D008283 3.3e-115 420.2 754 39.7
HPP92_018405 Vanilla planifolia HOM05D006530 ORTHO05D008283 3.7e-111 406.8 771 38.7
Sc20g0005070 Simmondsia chinensis HOM05D006530 ORTHO05D008283 2.0e-109 401.0 704 40.1
CDE10G0956 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 3.4e-96 357.1 847 33.4
ATR1001G009 Amborella trichopoda HOM05D006530 ORTHO05D008283 1.1e-94 352.1 495 45.1
SEGI_28144 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 1.3e-87 328.6 402 48.0
Pp3c20_8530 Physcomitrium patens HOM05D006530 ORTHO05D008283 1.9e-86 324.7 812 33.6
BcaB06g26965 Brassica carinata HOM05D006530 ORTHO05D008283 5.6e-83 313.2 603 38.1
AagrBONN_evm.TU.Sc2ySwM_228.92 Anthoceros agrestis HOM05D006530 ORTHO05D008283 3.3e-75 287.3 807 33.3
SGA_v2.0_scaffold49G18363 Striga asiatica HOM05D006530 ORTHO05D008283 1.4e-73 282.0 763 31.2
TPR.G7490 Trifolium pratense HOM05D006530 ORTHO05D008283 1.7e-71 275.0 490 39.4
Mapoly0071s0087 Marchantia polymorpha HOM05D006530 ORTHO05D008283 2.2e-71 274.6 486 39.1
TPR.G22470 Trifolium pratense HOM05D006530 ORTHO05D008283 3.1e-65 254.2 275 52.4
ClCG02G018190 Citrullus lanatus HOM05D006530 ORTHO05D008283 6.5e-55 219.9 775 29.2
FAN03G2558 Fragaria x ananassa HOM05D006530 ORTHO05D008283 8.2e-42 176.4 183 52.5
MD17G1108500 Malus domestica HOM05D006530 ORTHO05D008283 2.1e-37 161.8 768 26.7
Cre16.g684000 Chlamydomonas reinhardtii HOM05D006530 ORTHO05D008283 2.8e-34 151.4 288 34.4
MCO07G103 Micromonas commoda HOM05D006530 ORTHO05D008283 4.8e-34 150.6 390 31.0
FAN15G1469 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.0e-31 142.9 155 51.6
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.0e-31 142.9 155 51.6
FAN27G2805 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.0e-31 142.9 155 51.6
SEGI_11846 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 7.7e-24 116.7 108 50.9
Cfa025683 Carpinus fangiana HOM05D006530 ORTHO05D008283 1.3e-15 89.4 114 43.9
SHI10239 Sapria himalayana HOM05D006530 ORTHO05D008283 2.8e-13 81.6 100 48.0
BcaB06g26964 Brassica carinata HOM05D006530 ORTHO05D008283 8.9e-12 76.6 81 49.4
SGA_v2.0_scaffold112G31585 Striga asiatica HOM05D006530 ORTHO05D008283 3.1e-09 68.2 45 64.4
CBR_g12763 Chara braunii HOM05D003423 ORTHO05D003910 9.2e-09 66.6 168 33.9
CDE04G0040 Ceratophyllum demersum HOM05D003423 ORTHO05D003910 3.5e-08 64.7 104 38.5
FvH4_3g29470 Fragaria vesca HOM05D003423 ORTHO05D003910 3.5e-08 64.7 92 35.9
Cfa022425 Carpinus fangiana HOM05D003423 ORTHO05D003910 4.5e-08 64.3 191 28.8
Lj6g0015704 Lotus japonicus HOM05D003423 ORTHO05D003910 4.5e-08 64.3 149 31.5
Aqoxy6G02866 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 7.8e-08 63.5 92 38.0
HanXRQChr09g0277351 Helianthus annuus HOM05D003423 ORTHO05D003910 1.0e-07 63.2 163 31.9
Hund01908 Selenicereus undatus HOM05D003423 ORTHO05D003910 1.0e-07 63.2 104 37.5
HanXRQChr11g0333391 Helianthus annuus HOM05D003423 ORTHO05D003910 1.3e-07 62.8 149 30.9
Hma1.2p1_0036F.1_g022545 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 1.7e-07 62.4 167 31.1
Hma1.2p1_0036F.1_g022550 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 1.7e-07 62.4 167 31.1
Actinidia37163 Actinidia chinensis HOM05D003423 ORTHO05D003910 2.3e-07 62.0 165 29.7
AagrBONN_evm.TU.Sc2ySwM_228.5488 Anthoceros agrestis HOM05D003423 ORTHO05D003910 2.3e-07 62.0 199 28.1
Aa31LG10G260 Aethionema arabicum HOM05D003423 ORTHO05D003910 2.9e-07 61.6 147 29.9
MELO3C009034.2 Cucumis melo HOM05D003423 ORTHO05D003910 2.9e-07 61.6 161 32.3
Sp1g41520 Schrenkiella parvula HOM05D003423 ORTHO05D003910 2.9e-07 61.6 104 35.6
SMO361G0751 Selaginella moellendorffii HOM05D003423 ORTHO05D003910 2.9e-07 61.6 165 28.5
Sc16g0007990 Simmondsia chinensis HOM05D003423 ORTHO05D003910 2.9e-07 61.6 148 33.1
Ah.06g181290 Amaranthus hybridus HOM05D003423 ORTHO05D003910 3.8e-07 61.2 88 38.6
BraA08t32113Z Brassica rapa HOM05D003423 ORTHO05D003910 3.8e-07 61.2 104 36.5
PSO063G5220 Papaver somniferum HOM05D003423 ORTHO05D003910 5.0e-07 60.8 93 36.6
PSO782G1032 Papaver somniferum HOM05D003423 ORTHO05D003910 5.0e-07 60.8 92 34.8
TAR624G0752 Trochodendron aralioides HOM05D003423 ORTHO05D003910 5.0e-07 60.8 104 34.6
Medtr3g058580 Medicago truncatula HOM05D003423 ORTHO05D003910 6.6e-07 60.5 104 34.6
SHI10236 Sapria himalayana HOM05D006530 ORTHO05D008283 6.6e-07 60.5 73 46.6
C03p93330 Brassica napus HOM05D003423 ORTHO05D003910 8.6e-07 60.1 104 35.6
BraA08t32074Z Brassica rapa HOM05D003423 ORTHO05D003910 8.6e-07 60.1 104 35.6
Aqoxy2G03521 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 1.1e-06 59.7 166 30.7
AT1G55915 Arabidopsis thaliana HOM05D003423 ORTHO05D003910 1.1e-06 59.7 105 37.1
EL10Ac4g07604 Beta vulgaris HOM05D003423 ORTHO05D003910 1.1e-06 59.7 150 33.3
BcaC01g01534 Brassica carinata HOM05D003423 ORTHO05D003910 1.1e-06 59.7 173 30.1
CARHR045630 Cardamine hirsuta HOM05D003423 ORTHO05D003910 1.1e-06 59.7 92 35.9
Thhalv10011589m.g Eutrema salsugineum HOM05D003423 ORTHO05D003910 1.1e-06 59.7 130 33.1
FAN25G2240 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.1e-06 59.7 93 36.6
Os06g0191200 Oryza sativa ssp. japonica HOM05D003423 ORTHO05D003910 1.1e-06 59.7 152 32.9
CiPaw.11G202400 Carya illinoinensis HOM05D003423 ORTHO05D003910 1.5e-06 59.3 166 30.7
CiPaw.12G136700 Carya illinoinensis HOM05D003423 ORTHO05D003910 1.5e-06 59.3 92 33.7
Gohir.D13G137300 Gossypium hirsutum HOM05D003423 ORTHO05D003910 1.5e-06 59.3 104 33.7
Gorai.013G153900 Gossypium raimondii HOM05D003423 ORTHO05D003910 1.5e-06 59.3 104 33.7
QL08p004807 Quercus lobata HOM05D003423 ORTHO05D003910 1.5e-06 59.3 166 29.5
Sed0010386 Sechium edule HOM05D003423 ORTHO05D003910 1.5e-06 59.3 163 31.3
PGSC0003DMG400029797 Solanum tuberosum HOM05D003423 ORTHO05D003910 1.5e-06 59.3 154 31.8
SGA_v2.0_scaffold42G16002 Striga asiatica HOM05D003423 ORTHO05D003910 1.5e-06 59.3 168 32.1
Gorai.010G207500 Gossypium raimondii HOM05D003423 ORTHO05D003910 1.9e-06 58.9 104 33.7
Solyc12g015660.2 Solanum lycopersicum HOM05D003423 ORTHO05D003910 1.9e-06 58.9 154 31.8
Sopen12g007570 Solanum pennellii HOM05D003423 ORTHO05D003910 1.9e-06 58.9 154 31.8
Carub.0001s4451 Capsella rubella HOM05D003423 ORTHO05D003910 2.5e-06 58.5 103 35.9
C03p92860 Brassica napus HOM05D003423 ORTHO05D003910 3.3e-06 58.2 104 34.6
BolC3t21592H Brassica oleracea HOM05D003423 ORTHO05D003910 3.3e-06 58.2 104 34.6
Eucgr.F03997 Eucalyptus grandis HOM05D003423 ORTHO05D003910 3.3e-06 58.2 104 34.6
CANSAT11G1165 Cannabis sativa HOM05D003423 ORTHO05D003910 4.3e-06 57.8 166 31.3
Duzib213G0099 Durio zibethinus HOM05D003423 ORTHO05D003910 4.3e-06 57.8 167 31.7
Thecc.07G016500 Theobroma cacao HOM05D003423 ORTHO05D003910 4.3e-06 57.8 166 30.1
A08p00550 Brassica napus HOM05D003423 ORTHO05D003910 5.6e-06 57.4 140 30.7
BolC3t21631H Brassica oleracea HOM05D003423 ORTHO05D003910 5.6e-06 57.4 104 34.6
Oeu051387.2 Olea europaea HOM05D003423 ORTHO05D003910 5.6e-06 57.4 92 35.9
ClCG04G000610 Citrullus lanatus HOM05D003423 ORTHO05D003910 7.3e-06 57.0 158 31.0
Nitab4.5_0000163g0280 Nicotiana tabacum HOM05D003423 ORTHO05D003910 7.3e-06 57.0 158 28.5
CSS0034763 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 9.5e-06 56.6 92 33.7
CSS0038448 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 9.5e-06 56.6 92 33.7


User provided reference genes

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