Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.9e-56 222.2 110 100.0
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 5.6e-40 167.5 107 79.4
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.4e-37 158.3 110 71.8
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 7.5e-37 157.1 107 74.8
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.5e-29 132.9 111 63.1
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 3.7e-28 128.3 111 60.4
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 2.4e-27 125.6 109 57.8
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.1e-26 122.5 113 58.4
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.3e-25 119.8 110 56.4
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 3.0e-25 118.6 115 57.4
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.9e-25 118.2 107 57.9
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 8.6e-25 117.1 110 56.4
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.5e-24 115.5 113 56.6
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.5e-24 115.5 113 56.6
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.5e-24 115.5 113 56.6
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.3e-24 115.2 107 62.6
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 5.6e-24 114.4 110 55.5
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 7.3e-24 114.0 110 55.5
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.2e-23 110.9 110 50.9
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.8e-22 109.4 110 53.6
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 5.2e-22 107.8 108 57.4
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.0e-21 105.9 114 52.6
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.6e-21 105.5 109 52.3
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.6e-21 105.5 112 52.7
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.6e-21 105.5 110 51.8
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.4e-21 105.1 114 51.8
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 9.9e-21 103.6 123 50.4
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.7e-20 102.8 110 50.0
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.9e-20 102.1 111 49.5
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.9e-20 102.1 108 55.6
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 4.9e-20 101.3 111 50.5
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 6.4e-20 100.9 113 46.9
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.1e-19 100.1 108 51.9
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-19 99.8 108 50.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.9e-19 99.4 110 46.4
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.2e-19 98.6 112 50.9
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 3.2e-19 98.6 119 49.6
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 4.1e-19 98.2 102 53.9
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.1e-19 98.2 110 47.3
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.1e-19 98.2 110 50.0
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 5.4e-19 97.8 123 48.8
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 7.1e-19 97.4 112 45.5
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 9.2e-19 97.1 114 48.2
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 9.2e-19 97.1 114 48.2
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 9.2e-19 97.1 109 50.5
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 9.2e-19 97.1 110 47.3
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.2e-18 96.7 107 50.5
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.2e-18 96.7 110 47.3
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.6e-18 96.3 110 50.0
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.6e-18 96.3 112 50.0
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.6e-18 96.3 113 50.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 2.1e-18 95.9 108 50.0
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.7e-18 95.5 111 48.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.7e-18 95.5 111 48.6
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.7e-18 95.5 113 53.1
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.7e-18 95.5 113 53.1
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 7.8e-18 94.0 111 50.5
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.3e-17 93.2 110 44.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.3e-17 93.2 111 49.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-17 92.8 111 49.5
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.7e-17 92.8 120 49.2
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 3.0e-17 92.0 98 50.0
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 6.6e-17 90.9 108 48.1
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 6.6e-17 90.9 113 48.7
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 6.6e-17 90.9 113 48.7
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.1e-16 90.1 105 48.6
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.1e-16 90.1 113 50.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.5e-16 89.7 108 48.1
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.5e-16 89.0 96 46.9
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.5e-16 89.0 114 47.4
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.5e-16 89.0 96 53.1
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.5e-16 89.0 98 44.9
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 3.3e-16 88.6 82 57.3
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 3.3e-16 88.6 104 49.0
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 3.3e-16 88.6 95 52.6
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.3e-16 88.2 108 44.4
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 4.3e-16 88.2 110 46.4
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 5.6e-16 87.8 110 43.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 9.6e-16 87.0 96 49.0
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 9.6e-16 87.0 111 48.6
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 2.8e-15 85.5 95 52.6
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 2.8e-15 85.5 109 45.9
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 4.7e-15 84.7 111 43.2
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 6.2e-15 84.3 113 43.4
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 6.2e-15 84.3 114 44.7
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.0e-13 79.3 101 46.5
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.0e-13 79.3 99 48.5
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 2.0e-13 79.3 110 42.7
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.4e-13 78.2 106 40.6
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 7.6e-13 77.4 108 45.4
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.7e-12 76.3 105 38.1
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 1.7e-12 76.3 99 49.5
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.4e-11 73.2 108 44.4
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.9e-11 72.8 109 41.3
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.4e-11 72.4 110 40.9
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.4e-11 72.4 99 39.4
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.4e-11 71.2 104 39.4
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 7.1e-11 70.9 88 42.0
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 9.3e-11 70.5 100 47.0
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.0e-09 67.0 116 37.1
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.3e-09 65.9 113 38.9
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.9e-09 65.1 113 38.9
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.9e-09 65.1 111 41.4
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 5.1e-09 64.7 84 42.9
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 6.6e-09 64.3 107 38.3
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 6.6e-09 64.3 118 36.4
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.1e-08 63.5 107 38.3
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.1e-08 63.5 114 41.2
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.5e-08 63.2 110 38.2
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.5e-08 63.2 110 38.2
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 1.5e-08 63.2 95 44.2
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.5e-08 63.2 95 37.9
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 3.3e-08 62.0 110 36.4
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.3e-08 62.0 113 37.2
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 4.3e-08 61.6 110 37.3
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.6e-08 61.2 115 35.7
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 7.3e-08 60.8 113 38.9
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 7.3e-08 60.8 61 52.5
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 9.6e-08 60.5 113 36.3
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.3e-07 60.1 110 36.4
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.6e-07 59.7 111 38.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.1e-07 59.3 102 41.2
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.1e-07 59.3 98 39.8
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 4.8e-07 58.2 114 36.0
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 6.2e-07 57.8 107 37.4
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 6.2e-07 57.8 107 37.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 6.2e-07 57.8 107 37.4
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 8.1e-07 57.4 107 37.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 8.1e-07 57.4 107 37.4
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.4e-06 56.6 62 51.6
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.4e-06 56.6 111 36.9
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.0e-06 55.1 110 32.7
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 4.0e-06 55.1 107 36.4
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.3e-06 54.7 107 36.4
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 6.9e-06 54.3 101 34.7
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 9.0e-06 53.9 108 34.3
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 9.0e-06 53.9 96 35.4


User provided reference genes

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