Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.1e-55 218.8 110 100.0
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.7e-47 191.0 110 87.3
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 6.0e-42 174.1 110 78.2
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 7.5e-37 157.1 107 74.8
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 9.2e-35 150.2 111 69.4
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.2e-31 139.8 110 64.5
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.4e-30 136.3 107 69.2
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 4.0e-30 134.8 109 60.6
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 8.9e-30 133.7 110 61.8
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.6e-29 132.1 113 61.1
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 3.4e-29 131.7 111 60.4
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.4e-29 131.7 112 60.7
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 4.4e-29 131.3 114 60.5
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.7e-28 129.4 110 58.2
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 2.9e-28 128.6 110 60.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.4e-27 125.6 111 58.6
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.4e-27 125.6 111 58.6
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.4e-27 125.6 111 58.6
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 4.1e-27 124.8 123 57.7
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 4.1e-27 124.8 111 61.3
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.1e-27 124.8 112 57.1
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 5.4e-27 124.4 110 57.3
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 7.1e-27 124.0 119 58.0
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.1e-26 122.5 114 57.9
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.1e-26 122.5 106 61.3
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.0e-26 120.9 109 60.6
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.0e-26 120.9 109 60.6
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 6.0e-26 120.9 111 58.6
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.0e-25 120.2 111 55.9
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 3.9e-25 118.2 110 57.3
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.5e-24 116.3 120 56.7
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.9e-24 115.9 112 58.0
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 3.3e-24 115.2 111 55.9
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.3e-24 114.8 110 56.4
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 5.6e-24 114.4 114 56.1
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.6e-23 112.8 110 53.6
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 4.7e-23 111.3 110 50.9
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 8.1e-23 110.5 111 53.2
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.1e-22 110.2 110 50.9
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.4e-22 109.8 111 51.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 2.4e-22 109.0 107 53.3
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.4e-22 109.0 109 51.4
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 2.4e-22 109.0 110 53.6
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 4.0e-22 108.2 102 57.8
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.0e-22 108.2 110 50.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.2e-22 107.8 112 53.6
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 5.2e-22 107.8 123 53.7
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 6.8e-22 107.5 111 53.2
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 8.9e-22 107.1 108 51.9
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.5e-21 106.3 110 50.9
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.0e-21 105.9 111 51.4
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.0e-21 105.9 111 51.4
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.0e-21 105.9 112 52.7
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.0e-21 105.9 112 50.9
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.0e-21 105.9 107 47.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.6e-21 105.5 98 53.1
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 3.4e-21 105.1 112 50.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 4.4e-21 104.8 96 50.0
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 5.8e-21 104.4 110 50.9
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 9.9e-21 103.6 111 53.2
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 9.9e-21 103.6 110 49.1
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.3e-20 103.2 110 47.3
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.3e-20 103.2 110 49.1
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.7e-20 102.8 100 56.0
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.7e-20 102.8 114 52.6
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.7e-20 102.8 114 52.6
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.7e-20 102.8 105 51.4
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.2e-20 102.4 114 49.1
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.2e-20 102.4 114 49.1
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 4.9e-20 101.3 98 56.1
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.1e-19 100.1 104 51.0
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-19 100.1 111 49.5
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.1e-19 100.1 111 52.3
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.1e-19 100.1 99 51.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.4e-19 99.0 111 51.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 2.4e-19 99.0 113 46.9
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.2e-19 98.6 114 50.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 9.2e-19 97.1 98 49.0
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.1e-18 95.9 105 48.6
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.7e-18 95.5 99 48.5
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 6.0e-18 94.4 111 46.8
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.0e-17 93.6 95 53.7
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.3e-17 93.2 90 57.8
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 3.0e-17 92.0 113 46.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 5.1e-17 91.3 115 46.1
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 5.1e-17 91.3 96 52.1
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 6.6e-17 90.9 115 45.2
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 6.6e-17 90.9 101 47.5
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 6.6e-17 90.9 95 51.6
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 8.7e-17 90.5 115 47.8
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.9e-16 89.4 110 40.0
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.6e-16 87.8 113 41.6
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.6e-16 87.8 110 43.6
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 5.6e-16 87.8 114 50.0
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 7.3e-16 87.4 96 45.8
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 9.6e-16 87.0 115 43.5
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.6e-15 86.3 110 41.8
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 3.6e-15 85.1 110 41.8
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 3.6e-15 85.1 110 41.8
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.6e-15 85.1 114 45.6
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.6e-15 85.1 110 38.2
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.1e-14 83.6 110 40.9
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.4e-14 83.2 110 46.4
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.8e-14 82.8 104 38.5
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 2.4e-14 82.4 113 45.1
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 3.1e-14 82.0 110 40.0
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.0e-14 81.6 117 41.0
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.2e-14 81.3 117 41.0
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 7.6e-13 77.4 110 40.0
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 7.6e-13 77.4 119 38.7
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 7.6e-13 77.4 101 46.5
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 7.6e-13 77.4 100 45.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 7.6e-13 77.4 113 43.4
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 9.9e-13 77.0 111 43.2
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.3e-12 76.6 115 38.3
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.7e-12 76.3 103 37.9
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 6.4e-12 74.3 117 37.6
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 6.4e-12 74.3 110 40.9
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 6.4e-12 74.3 110 40.9
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 8.4e-12 73.9 110 41.8
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.1e-11 73.6 110 41.8
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.1e-11 73.6 110 41.8
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.1e-11 73.6 113 39.8
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.4e-11 72.4 110 38.2
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.2e-11 72.0 116 37.1
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 5.4e-11 71.2 113 39.8
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 5.4e-11 71.2 113 40.7
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 7.1e-11 70.9 96 44.8
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 9.3e-11 70.5 106 42.5
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 9.3e-11 70.5 105 38.1
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 9.3e-11 70.5 110 40.9
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.6e-10 69.7 99 42.4
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.1e-10 69.3 101 37.6
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 3.5e-10 68.6 86 44.2
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 7.8e-10 67.4 114 39.5
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 6.6e-09 64.3 114 36.0
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 6.6e-09 64.3 105 35.2
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.5e-08 63.2 102 39.2
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.6e-07 59.7 63 52.4
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 6.2e-07 57.8 73 39.7
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.4e-06 56.6 111 36.0


User provided reference genes

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