Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 6.4e-302 1040.0 553 100.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 8.0e-228 793.9 593 74.9
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.0e-211 738.8 542 74.7
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.3e-190 670.2 544 71.0
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.3e-172 610.5 544 65.4
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 2.9e-169 599.4 542 64.2
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 6.4e-169 598.2 550 62.2
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 9.3e-168 594.3 547 63.3
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.1e-165 587.4 552 63.2
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 4.5e-162 575.5 576 59.0
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.8e-162 575.1 543 59.3
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.2e-160 568.9 547 60.5
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 6.0e-159 565.1 550 61.5
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 4.3e-157 558.9 542 61.3
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 9.6e-157 557.8 565 58.1
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.4e-152 543.9 543 59.5
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.5e-151 539.3 550 58.0
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 3.9e-150 535.8 551 58.6
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 4.3e-149 532.3 547 58.7
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.7e-148 529.3 550 58.0
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 4.8e-148 528.9 548 60.0
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.4e-147 526.6 549 57.0
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.3e-147 525.4 545 57.6
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.4e-146 522.7 543 57.5
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 5.8e-146 521.9 552 55.6
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 3.8e-145 519.2 543 57.5
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 6.5e-145 518.5 543 56.2
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 5.5e-144 515.4 542 57.9
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.6e-143 513.8 579 55.4
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.6e-143 513.8 541 57.1
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.1e-143 513.5 550 56.4
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 2.3e-142 510.0 556 56.1
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 8.7e-142 508.1 558 57.7
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 9.7e-141 504.6 550 55.8
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 9.7e-141 504.6 582 54.6
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.3e-140 504.2 553 55.5
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 3.1e-139 499.6 560 55.5
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 3.1e-139 499.6 546 53.8
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 9.0e-139 498.0 588 53.4
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.5e-138 497.3 546 53.7
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 7.7e-138 495.0 544 55.7
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 6.5e-137 491.9 573 52.0
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.9e-136 490.3 543 55.2
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 4.2e-136 489.2 555 54.6
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 5.5e-136 488.8 544 55.3
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.6e-135 486.1 600 53.3
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 6.1e-135 485.3 338 76.0
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 7.9e-135 485.0 549 53.4
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 3.9e-134 482.6 543 54.1
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 8.8e-134 481.5 461 63.1
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 7.4e-133 478.4 546 54.0
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.7e-132 477.2 506 58.1
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 8.2e-132 474.9 545 53.0
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.1e-131 474.6 634 48.3
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 9.1e-131 471.5 580 52.1
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 2.6e-130 469.9 548 54.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 5.9e-130 468.8 567 52.7
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.4e-128 464.2 550 54.0
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.4e-128 464.2 568 51.2
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 5.5e-128 462.2 553 52.8
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 7.9e-127 458.4 482 57.5
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 8.8e-126 454.9 577 52.5
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.8e-124 449.9 553 53.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 8.2e-124 448.4 558 50.9
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 8.2e-124 448.4 571 51.3
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 4.1e-123 446.0 544 52.6
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 2.6e-122 443.4 551 50.8
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.9e-121 439.9 551 52.3
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 2.9e-121 439.9 545 51.0
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 8.5e-121 438.3 546 50.7
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 5.5e-120 435.6 552 50.9
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 7.2e-120 435.3 561 50.4
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.6e-119 434.1 546 50.5
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 2.0e-117 427.2 540 50.4
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 7.5e-117 425.2 544 49.4
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.4e-115 421.0 449 56.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 4.1e-115 419.5 564 50.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 4.1e-115 419.5 540 49.4
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 5.3e-115 419.1 546 48.9
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 7.0e-115 418.7 543 50.6
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 9.1e-115 418.3 548 49.5
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.7e-113 414.1 543 50.3
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.2e-113 413.7 548 49.5
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.2e-113 413.7 544 48.5
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 5.0e-113 412.5 545 50.1
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 8.0e-111 405.2 473 54.1
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.6e-109 400.2 592 46.3
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.2e-108 397.1 537 48.4
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 3.7e-108 396.4 543 48.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 3.7e-108 396.4 543 48.4
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 6.3e-108 395.6 543 49.7
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.9e-105 386.7 547 46.4
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.1e-103 379.0 550 48.4
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 6.8e-102 375.6 549 46.8
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 3.4e-101 373.2 478 48.7
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.0e-99 365.5 498 49.2
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 3.8e-97 359.8 568 44.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.5e-96 357.8 572 45.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.3e-92 344.7 318 61.3
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 2.0e-90 337.4 503 47.7
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 2.0e-90 337.4 503 47.7
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.8e-90 335.5 297 60.9
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 5.6e-88 329.3 380 54.7
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.6e-87 327.8 538 43.1
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 4.4e-85 319.7 547 44.6
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.9e-83 314.3 537 43.4
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 7.8e-82 308.9 541 42.7
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 3.9e-81 306.6 550 42.0
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.9e-76 290.4 456 48.5
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 9.2e-75 285.4 457 48.4
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.7e-74 283.9 570 38.1
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 9.5e-72 275.4 297 53.5
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 6.0e-66 256.1 326 50.0
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.1e-64 251.9 406 44.1
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 7.6e-61 239.2 481 40.1
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 2.5e-48 197.6 570 33.0
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.8e-47 194.1 451 38.1
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 3.1e-46 190.7 585 32.8
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.3e-39 168.7 265 46.4
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 4.5e-37 160.2 265 42.3
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 4.2e-35 153.7 541 29.2
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 3.3e-32 144.1 208 39.4
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 2.9e-28 131.0 189 51.3
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.3e-23 115.5 230 38.7
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 2.2e-23 114.8 257 38.1
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.9e-20 104.4 128 52.3
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.8e-20 104.0 100 58.0
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 6.7e-17 93.2 219 37.9
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 8.8e-17 92.8 215 38.6
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 5.7e-16 90.1 69 60.9
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 2.2e-15 88.2 165 29.7
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 3.1e-14 84.3 199 36.7
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.6e-13 81.3 131 45.0
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.9e-11 75.1 100 49.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.9e-11 75.1 100 49.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.9e-11 75.1 100 49.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.9e-11 75.1 100 49.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.9e-11 75.1 100 49.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.9e-11 75.1 100 49.0
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 7.2e-11 73.2 219 31.1
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.3e-09 68.2 98 49.0
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 9.7e-08 62.8 37 70.3
Hma1.2p1_0081F.1_g042300 Hydrangea macrophylla HOM05D002452 ORTHO05D006766 2.8e-07 61.2 48 64.6
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 4.1e-06 57.4 69 58.0


User provided reference genes

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