Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 0.0e+00 1318.1 658 100.0
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 1.3e-282 976.1 604 81.3
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 6.3e-272 940.6 594 78.8
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 3.6e-267 924.9 594 77.1
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 4.5e-262 907.9 600 74.2
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 4.4e-257 891.3 601 73.2
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 5.7e-257 891.0 594 73.4
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 1.3e-256 889.8 598 72.7
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 8.2e-256 887.1 597 72.5
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 1.3e-253 879.8 600 71.7
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 2.2e-253 879.0 595 71.6
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 6.5e-253 877.5 601 71.4
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 1.1e-252 876.7 593 71.7
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.6e-251 872.8 593 71.5
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.7e-251 872.1 604 69.2
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 2.7e-251 872.1 604 69.2
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 6.1e-251 870.9 594 70.7
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 2.3e-250 869.0 600 69.2
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 5.2e-250 867.8 601 69.9
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 6.8e-250 867.5 596 70.1
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 2.0e-249 865.9 601 69.7
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 2.0e-249 865.9 601 69.4
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 1.3e-248 863.2 600 70.0
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 1.7e-248 862.8 595 70.4
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 1.1e-247 860.1 596 70.0
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 1.8e-247 859.4 603 69.7
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 2.4e-247 859.0 605 68.4
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 3.1e-247 858.6 613 67.4
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 5.4e-247 857.8 593 69.8
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 9.1e-247 857.1 597 69.5
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 4.5e-246 854.7 593 69.8
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 5.9e-246 854.4 594 70.2
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.0e-245 853.6 603 69.5
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 1.3e-245 853.2 602 69.6
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 2.2e-245 852.4 594 69.2
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 5.0e-245 851.3 594 69.7
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 8.5e-245 850.5 594 69.9
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 2.5e-244 849.0 592 68.6
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 5.5e-244 847.8 594 69.5
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 7.2e-244 847.4 594 69.7
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 1.6e-243 846.3 590 69.5
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.6e-243 846.3 594 69.7
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 1.6e-243 846.3 594 69.5
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 2.1e-243 845.9 577 71.9
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 2.1e-243 845.9 591 69.9
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.7e-243 845.5 596 69.3
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 2.7e-243 845.5 594 69.7
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 2.7e-243 845.5 577 71.6
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.6e-243 845.1 594 69.9
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 4.7e-243 844.7 619 66.4
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 1.0e-242 843.6 594 69.2
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 1.4e-242 843.2 594 68.4
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 8.8e-242 840.5 590 69.0
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 1.5e-241 839.7 594 69.7
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.5e-241 839.7 604 68.4
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 9.8e-241 837.0 578 72.8
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 3.1e-239 832.0 594 67.8
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.2e-238 830.1 598 67.9
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 2.0e-238 829.3 593 68.6
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.5e-238 828.6 602 67.8
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 1.0e-237 827.0 601 67.4
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 1.3e-237 826.6 595 67.2
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 3.8e-237 825.1 596 66.8
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 6.6e-237 824.3 594 67.3
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 1.1e-236 823.5 596 66.6
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 1.9e-236 822.8 654 64.1
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 3.3e-236 822.0 581 68.2
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 5.5e-236 821.2 596 67.1
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 9.5e-236 820.5 594 68.2
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 2.1e-235 819.3 601 66.9
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 8.9e-234 813.9 596 65.8
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 1.5e-233 813.1 593 67.1
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.7e-232 809.7 611 65.3
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 2.9e-232 808.9 596 64.9
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 3.7e-232 808.5 596 64.8
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 4.9e-232 808.1 596 65.1
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 4.9e-232 808.1 596 65.1
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 8.3e-232 807.4 601 65.6
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 1.1e-231 807.0 596 64.8
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 1.4e-231 806.6 478 79.9
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 3.2e-231 805.4 601 64.7
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 5.4e-231 804.7 594 67.7
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 7.0e-231 804.3 601 65.1
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 7.0e-231 804.3 592 65.2
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 9.2e-231 803.9 604 64.7
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 9.2e-231 803.9 604 64.7
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 1.2e-230 803.5 596 64.4
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 4.6e-230 801.6 604 64.6
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.0e-229 800.4 604 64.4
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 1.1e-228 797.0 550 70.5
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 2.5e-228 795.8 588 64.6
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 3.3e-228 795.4 600 64.5
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 6.2e-227 791.2 596 64.3
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 2.0e-225 786.2 593 65.6
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 5.8e-225 784.6 594 65.7
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 1.9e-223 779.6 593 64.2
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 3.3e-220 768.8 605 63.3
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 5.1e-213 745.0 448 77.9
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 6.6e-213 744.6 584 63.0
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 5.6e-212 741.5 600 60.7
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 4.1e-207 725.3 436 79.6
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 3.5e-206 722.2 521 67.9
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.6e-203 713.4 593 61.0
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 5.8e-201 704.9 435 77.2
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 1.1e-199 700.7 438 75.8
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.3e-195 687.2 408 76.7
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 6.9e-178 628.2 464 69.0
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 3.3e-172 609.4 608 51.2
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 1.5e-164 583.9 456 64.7
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 4.8e-163 578.9 452 64.6
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 5.1e-149 532.3 458 60.3
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.6e-145 520.8 608 47.2
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 3.0e-141 506.5 607 46.6
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 1.1e-138 498.0 569 47.5
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 3.1e-138 496.5 393 66.2
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 2.3e-117 427.2 371 60.4
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 1.9e-111 407.5 642 37.7
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 8.1e-94 349.0 387 50.9
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-93 347.8 222 71.2
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 1.1e-90 338.6 212 78.8
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.3e-83 315.1 287 61.0
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 2.9e-83 313.9 223 62.8
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.1e-74 285.4 607 36.2
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 6.5e-59 233.0 609 29.4
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 7.9e-57 226.1 604 28.6
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 8.7e-56 222.6 148 72.3
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.4e-55 219.5 151 68.9
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.3e-54 218.8 126 80.2
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 4.5e-52 210.3 139 71.9
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 2.7e-49 201.1 511 31.5
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 1.7e-43 181.8 95 82.1
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 3.8e-43 180.6 128 76.6
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 2.8e-30 137.9 201 44.3
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 9.1e-21 106.3 74 66.2
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.9e-19 101.3 85 57.6
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.7e-17 94.7 49 83.7
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.7e-17 94.7 51 78.4
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 5.4e-13 80.5 49 69.4
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 1.2e-12 79.3 59 74.6
Rhsim02G0097600 Rhododendron simsii HOM05D038291 ORTHO05D338377 4.4e-07 60.8 35 82.9
Rhsim08G0156500 Rhododendron simsii HOM05D038291 ORTHO05D339641 1.3e-06 59.3 34 82.4


User provided reference genes

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