Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.5e-110 402.9 203 100.0
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 2.8e-61 239.2 237 60.3
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.1e-57 227.3 234 55.6
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 3.0e-55 219.2 242 54.5
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 6.0e-48 194.9 234 50.9
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 6.0e-48 194.9 236 49.6
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 3.0e-47 192.6 233 49.8
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 5.1e-47 191.8 237 47.7
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 6.6e-47 191.4 236 49.6
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 8.7e-47 191.0 234 49.6
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 8.7e-47 191.0 235 48.1
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 3.3e-46 189.1 242 46.7
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.6e-45 186.8 231 48.1
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 2.1e-45 186.4 233 48.5
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.1e-45 186.4 239 48.1
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 1.1e-44 184.1 234 47.0
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.8e-44 183.3 233 48.1
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 3.1e-44 182.6 234 45.3
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 4.0e-44 182.2 237 47.3
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.0e-44 182.2 238 47.1
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 9.0e-44 181.0 234 46.6
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 9.0e-44 181.0 234 47.4
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.2e-43 180.6 239 47.3
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.2e-43 180.6 258 43.0
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 3.4e-43 179.1 252 45.6
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 4.5e-43 178.7 234 46.2
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 4.5e-43 178.7 234 47.4
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 4.5e-43 178.7 235 46.8
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 5.8e-43 178.3 235 48.1
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 7.6e-43 177.9 231 48.1
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.3e-42 177.2 234 47.4
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.7e-42 176.8 243 44.0
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.7e-42 176.8 235 45.1
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.2e-42 176.4 238 45.4
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 2.9e-42 176.0 240 46.7
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 4.9e-42 175.3 252 43.3
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 4.9e-42 175.3 236 46.6
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 4.9e-42 175.3 234 45.7
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.1e-41 174.1 236 46.2
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.1e-41 174.1 237 46.4
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.4e-41 173.7 234 43.6
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.4e-41 173.7 241 44.8
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 1.4e-41 173.7 240 42.1
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.9e-41 173.3 235 45.1
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.9e-41 173.3 237 46.4
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 4.2e-41 172.2 239 45.2
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 4.2e-41 172.2 232 46.1
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 5.5e-41 171.8 237 46.4
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 7.1e-41 171.4 234 44.4
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 9.3e-41 171.0 234 42.7
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 9.3e-41 171.0 233 45.1
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.2e-40 170.6 235 44.7
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 2.1e-40 169.9 231 44.6
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 4.6e-40 168.7 242 45.0
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 6.0e-40 168.3 237 44.7
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 6.0e-40 168.3 235 45.5
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 7.9e-40 167.9 235 43.4
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.8e-39 166.8 248 44.4
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.8e-39 166.8 235 44.3
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 2.3e-39 166.4 237 46.4
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.5e-38 163.7 212 47.6
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.9e-38 163.3 235 43.0
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 4.3e-38 162.2 241 42.3
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.3e-38 162.2 238 42.9
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 5.6e-38 161.8 233 40.3
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 1.6e-37 160.2 238 41.6
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.1e-37 159.8 236 44.1
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 3.7e-37 159.1 256 42.6
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.8e-36 156.8 241 40.2
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 2.4e-36 156.4 242 40.5
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 3.1e-36 156.0 240 40.4
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 4.0e-36 155.6 244 40.2
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 6.9e-36 154.8 241 39.8
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 6.9e-36 154.8 253 40.7
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 9.0e-36 154.5 241 40.7
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 9.0e-36 154.5 239 42.7
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 9.0e-36 154.5 238 38.2
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 2.0e-35 153.3 241 39.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 2.6e-35 152.9 240 40.4
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 4.5e-35 152.1 242 39.7
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 5.8e-35 151.8 225 40.9
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.7e-34 150.2 235 40.0
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.7e-34 150.2 235 41.7
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.4e-33 147.1 251 43.4
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 4.2e-33 145.6 240 39.6
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 7.1e-33 144.8 225 43.1
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 6.7e-31 138.3 234 37.2
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 8.7e-31 137.9 234 37.2
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 8.7e-31 137.9 237 38.8
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.3e-30 136.0 234 36.8
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 5.7e-30 135.2 347 32.0
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 2.1e-29 133.3 262 37.0
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 3.8e-26 122.5 236 37.7
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 8.4e-26 121.3 229 38.0
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 3.2e-25 119.4 205 41.0
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 5.5e-25 118.6 229 36.2
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.6e-24 117.1 187 41.2
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 6.1e-24 115.2 226 35.0
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 1.3e-23 114.0 239 35.1
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 8.7e-23 111.3 89 58.4
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 2.5e-22 109.8 224 31.7
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 2.8e-21 106.3 91 63.7
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 3.7e-21 105.9 224 31.2
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 2.4e-20 103.2 119 50.4
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 3.1e-20 102.8 220 33.6
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 6.9e-20 101.7 227 31.3
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 2.6e-19 99.8 207 35.3
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-18 97.4 228 30.3
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 5.5e-17 92.0 86 47.7
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.7e-16 89.7 230 29.6
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.7e-16 89.7 230 29.6
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 2.7e-16 89.7 224 32.1
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.8e-15 87.0 81 46.9
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.8e-15 87.0 81 46.9
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.3e-15 86.7 81 46.9
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 8.8e-15 84.7 193 37.3
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 4.3e-14 82.4 203 35.0
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 5.7e-14 82.0 102 46.1
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.4e-12 76.6 65 58.5
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 4.1e-12 75.9 204 29.4
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.5e-11 72.4 82 50.0
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 5.9e-11 72.0 215 29.3
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 3.2e-09 66.2 37 78.4
HanXRQChr09g0239031 Helianthus annuus HOM05D005295 ORTHO05D005962 2.0e-06 57.0 47 59.6
HanXRQChr11g0352521 Helianthus annuus HOM05D005295 ORTHO05D005962 2.0e-06 57.0 47 59.6
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 3.3e-06 56.2 236 25.4
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 4.4e-06 55.8 116 38.8
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 5.7e-06 55.5 33 72.7
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 5.7e-06 55.5 33 72.7
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 5.7e-06 55.5 33 72.7
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 5.7e-06 55.5 33 72.7
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 5.7e-06 55.5 33 72.7
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 5.7e-06 55.5 33 72.7


User provided reference genes

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