Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.1e-95 353.2 318 100.0
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.6e-79 300.4 175 86.9
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 8.7e-78 294.7 169 87.6
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 3.3e-77 292.7 174 85.1
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.3e-77 292.7 168 87.5
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 4.3e-77 292.4 174 85.1
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 4.3e-77 292.4 168 86.9
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.6e-76 290.4 168 86.9
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 6.3e-76 288.5 168 86.3
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.1e-75 287.7 174 85.1
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.4e-75 286.6 174 82.8
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 5.3e-75 285.4 174 83.9
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 2.6e-74 283.1 174 82.8
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 2.6e-74 283.1 174 82.8
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 3.4e-74 282.7 175 82.9
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 4.5e-74 282.3 174 82.8
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 5.9e-74 282.0 172 83.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 7.7e-74 281.6 172 83.1
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.0e-73 281.2 172 82.0
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-73 280.4 174 82.2
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-73 280.4 174 82.2
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.7e-73 280.4 172 82.6
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 2.2e-73 280.0 174 82.2
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 3.8e-73 279.3 174 81.0
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 5.0e-73 278.9 170 82.9
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 6.5e-73 278.5 173 81.5
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 6.5e-73 278.5 178 80.3
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 8.5e-73 278.1 170 82.9
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 8.5e-73 278.1 173 80.9
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 1.4e-72 277.3 170 82.4
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.9e-72 276.9 172 81.4
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 3.2e-72 276.2 170 82.4
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 3.2e-72 276.2 169 82.2
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 4.2e-72 275.8 150 95.3
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 7.2e-72 275.0 174 80.5
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 7.2e-72 275.0 174 78.7
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.6e-71 273.9 171 81.9
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 2.1e-71 273.5 173 82.1
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 2.1e-71 273.5 169 81.7
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 3.6e-71 272.7 166 83.1
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 3.6e-71 272.7 170 81.2
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 7.9e-71 271.6 174 79.3
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 7.9e-71 271.6 175 77.1
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.0e-70 271.2 174 79.3
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.0e-70 271.2 174 79.3
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.4e-70 270.8 172 80.8
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.4e-70 270.8 168 81.5
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.3e-70 270.0 169 81.1
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 3.9e-70 269.2 167 80.8
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 6.7e-70 268.5 174 78.2
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 8.8e-70 268.1 175 76.6
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 8.8e-70 268.1 174 78.2
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.1e-69 267.7 175 76.6
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.1e-69 267.7 175 76.6
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.1e-69 267.7 175 76.6
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.1e-69 267.7 175 76.6
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.1e-69 267.7 175 76.6
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.1e-69 267.7 172 80.2
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 3.3e-69 266.2 175 75.4
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 3.3e-69 266.2 177 76.8
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 3.3e-69 266.2 174 77.6
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 2.2e-68 263.5 175 75.4
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.8e-68 263.1 175 76.0
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 2.8e-68 263.1 175 76.0
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 2.8e-68 263.1 175 77.1
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 6.3e-68 261.9 169 78.1
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 9.1e-67 258.1 174 76.4
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 2.0e-66 256.9 172 75.6
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.6e-66 256.5 171 76.0
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 4.5e-66 255.8 203 65.5
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.3e-65 254.2 172 77.3
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.7e-65 253.8 172 77.3
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.7e-65 253.8 169 76.3
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.7e-65 253.8 169 76.3
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 2.9e-65 253.1 221 63.8
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 5.0e-65 252.3 172 76.2
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.4e-64 250.8 168 77.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 2.5e-64 250.0 206 66.5
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.2e-63 247.7 170 75.9
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 9.7e-61 238.0 198 65.7
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 1.3e-60 237.7 168 70.2
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 2.2e-60 236.9 174 71.3
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 2.8e-60 236.5 174 71.8
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 7.0e-59 231.9 171 72.5
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 7.0e-59 231.9 160 78.1
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 9.1e-59 231.5 145 82.8
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 2.6e-58 229.9 156 75.6
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 2.2e-57 226.9 193 64.8
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.2e-55 221.1 169 69.2
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.2e-55 221.1 166 67.5
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 2.1e-55 220.3 156 74.4
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 8.0e-55 218.4 148 77.7
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.5e-53 214.2 150 74.7
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 3.7e-52 209.5 175 61.1
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.6e-50 204.1 168 63.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.2e-47 194.5 149 67.1
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.8e-46 188.3 118 83.9
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.2e-45 188.0 131 71.8
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 1.2e-34 151.4 73 93.2
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.4e-30 137.9 108 70.4
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.4e-30 137.9 108 70.4
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.9e-30 135.2 65 95.4
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 2.6e-29 133.7 93 80.6
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 3.7e-28 129.8 72 81.9
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 3.9e-25 119.8 124 58.9
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 2.8e-23 113.6 163 39.9
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 3.6e-23 113.2 93 65.6
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 4.0e-22 109.8 74 67.6
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 4.4e-21 106.3 180 36.1
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 5.6e-16 89.4 67 68.7
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 9.5e-16 88.6 76 68.4
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 9.5e-16 88.6 78 67.9
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 4.7e-15 86.3 67 71.6
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.2e-15 85.9 78 65.4
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.8e-14 84.3 64 71.9
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 2.1e-10 70.9 51 78.4
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 4.6e-10 69.7 32 93.8
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 3.9e-09 66.6 66 60.6
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 6.6e-09 65.9 40 82.5
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 4.7e-07 59.7 33 90.9
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 5.2e-06 56.2 32 78.1


User provided reference genes

Program Settings