Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11747 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.8e-65 252.3 118 100.0
CSS0008598 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.4e-25 119.0 97 60.8
Actinidia05113 Actinidia chinensis HOM05D000051 ORTHO05D000015 5.1e-23 111.3 96 55.2
Lj1A868T32 Lonicera japonica HOM05D000051 ORTHO05D000015 2.5e-14 82.4 101 48.5
GSVIVG01038076001 Vitis vinifera HOM05D000051 ORTHO05D000015 3.3e-14 82.0 106 40.6
Rhsim06G0019500 Rhododendron simsii HOM05D000051 ORTHO05D000015 5.6e-14 81.3 97 44.3
FAN11G2886 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.5e-11 73.2 119 37.0
vmacro11748 Vaccinium macrocarpon HOM05D000051 ORTHO05D017222 1.5e-11 73.2 76 47.4
FvH4_3g17581 Fragaria vesca HOM05D000051 ORTHO05D000015 2.0e-11 72.8 109 35.8
RcHm_v2.0_Chr5g0028461 Rosa chinensis HOM05D000051 ORTHO05D000015 5.8e-11 71.2 102 44.1
FvH4_3g17580 Fragaria vesca HOM05D000051 ORTHO05D000015 3.8e-10 68.6 116 35.3
FAN16G3202 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.8e-10 68.6 116 35.3
FvH4_3g21190 Fragaria vesca HOM05D000051 ORTHO05D000015 6.4e-10 67.8 100 44.0
Migut.M00548 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.1e-09 67.0 97 40.2
RcHm_v2.0_Chr5g0059961 Rosa chinensis HOM05D000051 ORTHO05D000015 1.1e-09 67.0 73 46.6
Prupe.4G161000 Prunus persica HOM05D000051 ORTHO05D000015 2.4e-09 65.9 112 36.6
FAN11G3894 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.2e-09 65.1 125 36.8
Sc13g0005650 Simmondsia chinensis HOM05D000051 ORTHO05D000015 4.2e-09 65.1 108 36.1
RcHm_v2.0_Chr5g0028411 Rosa chinensis HOM05D000051 ORTHO05D000015 5.5e-09 64.7 110 35.5
RcHm_v2.0_Chr5g0029291 Rosa chinensis HOM05D000051 ORTHO05D000015 7.1e-09 64.3 113 38.1
FAN10G3451 Fragaria x ananassa HOM05D000051 ORTHO05D000015 9.3e-09 63.9 73 42.5
Duzib213G0051 Durio zibethinus HOM05D000051 ORTHO05D000015 1.2e-08 63.5 98 37.8
FAN17G0415 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.2e-08 63.5 100 39.0
FAN18G0789 Fragaria x ananassa HOM05D012937 ORTHO05D000015 1.2e-08 63.5 98 37.8
Dinv17488 Davidia involucrata HOM05D000051 ORTHO05D000015 1.6e-08 63.2 104 39.4
TPR.G22237 Trifolium pratense HOM05D000051 ORTHO05D000015 1.6e-08 63.2 70 41.4
vmacro11759 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.6e-08 63.2 110 36.4
vmacro17042 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.6e-08 63.2 114 38.6
Actinidia06264 Actinidia chinensis HOM05D000051 ORTHO05D000015 2.1e-08 62.8 118 36.4
CSS0042786 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.1e-08 62.8 78 47.4
Dinv17485 Davidia involucrata HOM05D000051 ORTHO05D000015 2.1e-08 62.8 104 37.5
MD11G1274900 Malus domestica HOM05D000051 ORTHO05D000015 2.7e-08 62.4 107 38.3
FAN10G1889 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.5e-08 62.0 73 42.5
Rhsim13G0198300 Rhododendron simsii HOM05D000051 ORTHO05D000015 3.5e-08 62.0 118 34.7
CSS0042719 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 6.0e-08 61.2 78 46.2
FvH4_6g10000 Fragaria vesca HOM05D000051 ORTHO05D000015 6.0e-08 61.2 110 34.5
Rhsim01G0199000 Rhododendron simsii HOM05D000051 ORTHO05D000015 6.0e-08 61.2 120 34.2
RcHm_v2.0_Chr5g0059951 Rosa chinensis HOM05D000051 ORTHO05D000015 6.0e-08 61.2 73 43.8
FAN16G3673 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.9e-08 60.8 74 44.6
Rhsim06G0213600 Rhododendron simsii HOM05D000051 ORTHO05D339560 7.9e-08 60.8 52 55.8
RcHm_v2.0_Chr5g0028501 Rosa chinensis HOM05D000051 ORTHO05D000015 7.9e-08 60.8 86 39.5
DCAR_017364 Daucus carota HOM05D000051 ORTHO05D000015 1.0e-07 60.5 89 39.3
Migut.M00206 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.0e-07 60.5 98 34.7
FAN14G1913 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.0e-07 60.5 110 34.5
RcHm_v2.0_Chr5g0028521 Rosa chinensis HOM05D000051 ORTHO05D000015 1.0e-07 60.5 116 33.6
Migut.M00848 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.3e-07 60.1 101 33.7
FvH4_3g33400 Fragaria vesca HOM05D000051 ORTHO05D000015 1.3e-07 60.1 74 43.2
FAN09G4418 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.3e-07 60.1 106 34.0
RcHm_v2.0_Chr5g0033891 Rosa chinensis HOM05D000051 ORTHO05D000015 1.3e-07 60.1 108 35.2
RcHm_v2.0_Chr7g0192741 Rosa chinensis HOM05D000051 ORTHO05D000015 1.8e-07 59.7 104 41.3
Sc13g0005680 Simmondsia chinensis HOM05D000051 ORTHO05D000015 1.8e-07 59.7 73 41.1
Cc01_g01400 Coffea canephora HOM05D000051 ORTHO05D000015 2.3e-07 59.3 98 38.8
Cc01_g01420 Coffea canephora HOM05D000051 ORTHO05D000015 2.3e-07 59.3 99 38.4
Migut.M00835 Erythranthe guttata HOM05D000051 ORTHO05D000015 2.3e-07 59.3 97 35.1
MD08G1193400 Malus domestica HOM05D000051 ORTHO05D000015 2.3e-07 59.3 67 43.3
Thecc.07G082400 Theobroma cacao HOM05D000051 ORTHO05D000015 2.3e-07 59.3 124 31.5
vmacro14310 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.3e-07 59.3 112 35.7
FAN25G1937 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.0e-07 58.9 74 43.2
RcHm_v2.0_Chr1g0363171 Rosa chinensis HOM05D000051 ORTHO05D000015 3.0e-07 58.9 75 42.7
CSS0042330 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.9e-07 58.5 50 58.0
FvH4_3g32940 Fragaria vesca HOM05D000051 ORTHO05D000015 3.9e-07 58.5 71 42.3
FAN13G0806 Fragaria x ananassa HOM05D012937 ORTHO05D000015 3.9e-07 58.5 75 42.7
RcHm_v2.0_Chr5g0028261 Rosa chinensis HOM05D000051 ORTHO05D000015 3.9e-07 58.5 101 35.6
SGA_v2.0_scaffold70G23556 Striga asiatica HOM05D000051 ORTHO05D000015 3.9e-07 58.5 76 38.2
CAN.G1585.10 Capsicum annuum HOM05D000051 ORTHO05D011342 5.1e-07 58.2 71 40.8
FAN28G0582 Fragaria x ananassa HOM05D012937 ORTHO05D000015 5.1e-07 58.2 73 41.1
Cc01_g12550 Coffea canephora HOM05D000051 ORTHO05D000015 6.7e-07 57.8 64 51.6
Dinv20164 Davidia involucrata HOM05D000051 ORTHO05D000015 6.7e-07 57.8 107 36.4
Migut.M00839 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.7e-07 57.8 103 35.0
FvH4_3g17170 Fragaria vesca HOM05D000051 ORTHO05D000015 6.7e-07 57.8 59 55.9
Rhsim07G0063700 Rhododendron simsii HOM05D000051 ORTHO05D000015 6.7e-07 57.8 99 39.4
RcHm_v2.0_Chr4g0416371 Rosa chinensis HOM05D000051 ORTHO05D000015 6.7e-07 57.8 101 35.6
COL.COLO4_16364 Corchorus olitorius HOM05D000051 ORTHO05D000015 8.7e-07 57.4 75 42.7
COL.COLO4_35728 Corchorus olitorius HOM05D000051 ORTHO05D000015 8.7e-07 57.4 105 34.3
Dinv17490 Davidia involucrata HOM05D000051 ORTHO05D000015 8.7e-07 57.4 111 33.3
Sc07g0006550 Simmondsia chinensis HOM05D000051 ORTHO05D000015 8.7e-07 57.4 76 36.8
Actinidia15955 Actinidia chinensis HOM05D000051 ORTHO05D000015 1.1e-06 57.0 84 39.3
Cc05_g12180 Coffea canephora HOM05D000051 ORTHO05D000015 1.1e-06 57.0 80 40.0
COL.COLO4_00389 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.1e-06 57.0 108 33.3
FAN13G1655 Fragaria x ananassa HOM05D012937 ORTHO05D000015 1.1e-06 57.0 71 40.8
Gohir.A09G213658 Gossypium hirsutum HOM05D030405 ORTHO05D000015 1.1e-06 57.0 64 42.2
MD03G1276400 Malus domestica HOM05D000051 ORTHO05D000015 1.1e-06 57.0 105 34.3
MD11G1275400 Malus domestica HOM05D000051 ORTHO05D000015 1.1e-06 57.0 109 32.1
Gohir.D11G296768 Gossypium hirsutum HOM05D000051 ORTHO05D000015 1.5e-06 56.6 104 37.5
Gohir.D11G296776 Gossypium hirsutum HOM05D000051 ORTHO05D000015 1.5e-06 56.6 104 37.5
Prupe.4G160800 Prunus persica HOM05D000051 ORTHO05D000015 1.5e-06 56.6 104 33.7
RcHm_v2.0_Chr4g0417411 Rosa chinensis HOM05D000051 ORTHO05D000015 1.5e-06 56.6 111 34.2
RcHm_v2.0_Chr5g0028471 Rosa chinensis HOM05D000051 ORTHO05D000015 1.5e-06 56.6 107 33.6
Thecc.07G080800 Theobroma cacao HOM05D000051 ORTHO05D000015 1.5e-06 56.6 105 36.2
Cc05_g13410 Coffea canephora HOM05D000051 ORTHO05D000015 1.9e-06 56.2 58 46.6
COL.COLO4_11300 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.9e-06 56.2 82 45.1
Dinv17489 Davidia involucrata HOM05D000051 ORTHO05D000015 1.9e-06 56.2 108 38.0
Migut.M00825 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.9e-06 56.2 98 34.7
Migut.M00829 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.9e-06 56.2 69 42.0
Gorai.007G321500 Gossypium raimondii HOM05D000051 ORTHO05D000015 1.9e-06 56.2 104 37.5
MD03G1253500 Malus domestica HOM05D000051 ORTHO05D000015 1.9e-06 56.2 111 34.2
Medtr6g022500 Medicago truncatula HOM05D000051 ORTHO05D000015 1.9e-06 56.2 70 38.6
QL08p012292 Quercus lobata HOM05D000051 ORTHO05D000015 1.9e-06 56.2 102 37.3
CSS0016803 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.5e-06 55.8 73 45.2
FAN25G3744 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.5e-06 55.8 53 49.1
Gohir.A11G283200 Gossypium hirsutum HOM05D000051 ORTHO05D000015 2.5e-06 55.8 104 36.5
Prupe.4G158800 Prunus persica HOM05D000051 ORTHO05D000015 2.5e-06 55.8 78 38.5
RcHm_v2.0_Chr5g0028511 Rosa chinensis HOM05D000051 ORTHO05D000015 2.5e-06 55.8 91 40.7
TPR.G2114 Trifolium pratense HOM05D000051 ORTHO05D000015 2.5e-06 55.8 76 40.8
vmacro11750 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.5e-06 55.8 128 37.5
DCAR_024431 Daucus carota HOM05D000051 ORTHO05D000015 3.3e-06 55.5 103 37.9
Duzib213G0041 Durio zibethinus HOM05D000051 ORTHO05D000015 3.3e-06 55.5 106 34.9
Migut.M00541 Erythranthe guttata HOM05D000051 ORTHO05D000015 3.3e-06 55.5 97 37.1
Migut.M00832 Erythranthe guttata HOM05D000051 ORTHO05D000015 3.3e-06 55.5 69 39.1
Gohir.D09G214900 Gossypium hirsutum HOM05D030405 ORTHO05D000015 3.3e-06 55.5 62 41.9
Gorai.006G235300 Gossypium raimondii HOM05D030405 ORTHO05D000015 3.3e-06 55.5 62 41.9
Lj8A145G72 Lonicera japonica HOM05D000051 ORTHO05D000015 3.3e-06 55.5 72 44.4
QL08p012322 Quercus lobata HOM05D000051 ORTHO05D000015 3.3e-06 55.5 77 46.8
RcHm_v2.0_Chr5g0060771 Rosa chinensis HOM05D000051 ORTHO05D000015 3.3e-06 55.5 75 42.7
TPR.G14576 Trifolium pratense HOM05D000009 ORTHO05D000008 3.3e-06 55.5 96 36.5
CSS0014819 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.3e-06 55.1 50 56.0
FAN02G0400 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.3e-06 55.1 72 40.3
Lj3C73G19 Lonicera japonica HOM05D000051 ORTHO05D014235 4.3e-06 55.1 93 37.6
RcHm_v2.0_Chr5g0028401 Rosa chinensis HOM05D000051 ORTHO05D000015 4.3e-06 55.1 70 42.9
RcHm_v2.0_Chr5g0040081 Rosa chinensis HOM05D000051 ORTHO05D000015 4.3e-06 55.1 102 37.3
Dinv21722 Davidia involucrata HOM05D000051 ORTHO05D000015 5.6e-06 54.7 100 34.0
HanXRQChr17g0564791 Helianthus annuus HOM05D000051 ORTHO05D000015 5.6e-06 54.7 99 34.3
Medtr3g107160 Medicago truncatula HOM05D000051 ORTHO05D000015 5.6e-06 54.7 100 33.0
Oeu013813.1 Olea europaea HOM05D000051 ORTHO05D000015 5.6e-06 54.7 69 39.1
Rhsim04G0020200 Rhododendron simsii HOM05D000051 ORTHO05D000015 5.6e-06 54.7 82 41.5
RhsimUnG0031600 Rhododendron simsii HOM05D000051 ORTHO05D000015 5.6e-06 54.7 82 41.5
RcHm_v2.0_Chr2g0115721 Rosa chinensis HOM05D000051 ORTHO05D000015 5.6e-06 54.7 74 45.9
Dinv20165 Davidia involucrata HOM05D000051 ORTHO05D000015 7.4e-06 54.3 71 40.8
Migut.N01904 Erythranthe guttata HOM05D000051 ORTHO05D000015 7.4e-06 54.3 100 32.0
Lj2A948G37 Lonicera japonica HOM05D000051 ORTHO05D000015 7.4e-06 54.3 107 38.3
RcHm_v2.0_Chr5g0028551 Rosa chinensis HOM05D000051 ORTHO05D000015 7.4e-06 54.3 62 51.6
AUR62020677 Chenopodium quinoa HOM05D000051 ORTHO05D000015 9.6e-06 53.9 73 41.1
AUR62028041 Chenopodium quinoa HOM05D000576 ORTHO05D000368 9.6e-06 53.9 56 46.4
FvH4_3g33430 Fragaria vesca HOM05D000051 ORTHO05D000015 9.6e-06 53.9 104 37.5
FAN16G1403 Fragaria x ananassa HOM05D000051 ORTHO05D000015 9.6e-06 53.9 54 55.6
Glyma.08G348900 Glycine max HOM05D000051 ORTHO05D000015 9.6e-06 53.9 83 39.8
MD03G1112000 Malus domestica HOM05D000051 ORTHO05D000015 9.6e-06 53.9 76 40.8
MD03G1252900 Malus domestica HOM05D000051 ORTHO05D000015 9.6e-06 53.9 77 40.3
Medtr3g105060 Medicago truncatula HOM05D000051 ORTHO05D000015 9.6e-06 53.9 68 39.7
RcHm_v2.0_Chr5g0030631 Rosa chinensis HOM05D000051 ORTHO05D000015 9.6e-06 53.9 102 37.3


User provided reference genes

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