Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 0.0e+00 1608.6 824 100.0
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 0.0e+00 1159.1 845 73.8
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.5e-222 776.9 868 53.7
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.5e-206 723.8 835 52.7
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.7e-173 614.0 870 46.8
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 6.4e-157 558.9 875 43.0
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.1e-127 460.3 809 41.7
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 4.4e-113 413.3 468 53.2
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.9e-85 320.9 257 68.5
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 7.3e-84 316.2 864 34.1
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 4.4e-81 307.0 565 39.6
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.3e-77 295.4 888 32.2
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.3e-77 294.7 863 30.4
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 3.3e-76 290.8 884 32.0
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 7.5e-73 279.6 708 32.8
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.9e-71 275.0 737 31.9
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.0e-69 269.2 544 38.1
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 5.6e-68 263.5 832 32.2
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 9.5e-68 262.7 514 39.3
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.6e-67 260.8 600 34.8
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.2e-64 251.5 840 29.5
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 2.4e-63 248.1 830 31.8
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 7.1e-63 246.5 618 32.7
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 3.9e-61 240.7 864 29.5
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 2.1e-59 235.0 880 28.5
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.8e-59 234.6 822 29.9
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 3.4e-57 227.6 851 29.8
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 5.8e-57 226.9 875 29.0
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 2.2e-56 224.9 617 31.6
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 6.4e-56 223.4 846 29.6
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 8.4e-56 223.0 617 31.6
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 3.2e-55 221.1 505 33.1
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 3.2e-55 221.1 521 35.5
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.9e-52 211.8 410 39.3
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.3e-52 211.1 841 29.0
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.3e-52 211.1 841 29.0
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.3e-51 209.1 841 28.9
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.8e-50 205.3 553 33.1
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 2.4e-50 204.9 836 28.8
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.0e-50 204.1 852 28.2
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 9.0e-50 203.0 504 33.9
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.2e-49 202.6 533 32.3
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.9e-48 198.0 507 32.0
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.9e-48 197.2 531 31.5
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 4.6e-46 190.7 315 40.3
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.7e-45 186.4 398 35.9
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.5e-44 185.7 501 30.9
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 2.5e-44 184.9 490 31.6
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 7.3e-44 183.3 539 34.7
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.6e-44 183.0 539 34.9
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.3e-43 182.6 534 35.2
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.3e-43 182.6 542 30.8
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 2.1e-43 181.8 535 32.0
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 3.8e-40 171.0 535 29.0
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.8e-40 171.0 628 29.0
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 6.7e-37 160.2 614 28.8
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.5e-36 159.1 472 30.9
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.9e-36 158.7 313 38.3
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.3e-36 157.9 506 30.6
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 5.6e-36 157.1 800 27.1
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 5.6e-36 157.1 319 36.4
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 7.4e-36 156.8 228 43.9
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 6.2e-35 153.7 307 35.8
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.1e-35 153.3 509 30.5
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.1e-35 153.3 515 30.5
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.4e-34 152.5 392 32.4
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 2.4e-34 151.8 308 37.7
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 3.1e-34 151.4 309 36.2
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.2e-33 149.4 506 32.0
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 4.5e-33 147.5 318 36.5
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 7.6e-33 146.7 307 35.5
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.2e-32 145.2 307 35.5
Actinidia30400 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.9e-32 144.1 144 55.6
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.8e-29 135.6 309 32.4
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 3.0e-29 134.8 365 31.5
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 3.9e-29 134.4 542 29.5
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 6.7e-29 133.7 527 28.3
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 2.5e-28 131.7 301 34.2
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.7e-27 127.9 507 28.0
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.2e-27 127.1 512 28.1
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.0e-25 122.1 305 33.4
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 5.8e-25 120.6 301 33.9
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 8.4e-24 116.7 512 28.3
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.2e-22 112.8 322 33.2
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.1e-22 112.1 331 30.8
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 3.9e-21 107.8 137 48.2
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 5.7e-20 104.0 137 46.7
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 7.4e-20 103.6 267 34.1
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 2.8e-19 101.7 321 29.6
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.7e-19 101.3 521 26.1
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 6.3e-19 100.5 305 32.1
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 5.3e-18 97.4 305 31.1
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 5.3e-18 97.4 340 30.0
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 6.9e-18 97.1 320 29.4
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 1.2e-17 96.3 338 29.3
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.2e-17 96.3 288 31.6
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 1.5e-17 95.9 521 25.9
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.0e-17 95.5 282 29.4
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 2.6e-17 95.1 417 28.1
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 4.5e-17 94.4 331 30.2
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.9e-17 94.0 535 25.6
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 5.9e-17 94.0 325 29.5
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 7.7e-17 93.6 346 31.2
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 2.2e-16 92.0 549 26.0
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.9e-16 91.7 322 28.6
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 2.9e-16 91.7 451 27.5
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 5.5e-15 87.4 321 27.7
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 7.2e-15 87.0 328 28.4
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.6e-14 84.3 118 47.5
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 6.1e-14 84.0 385 28.6
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.0e-13 83.2 473 27.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.0e-13 83.2 323 28.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 1.0e-13 83.2 323 28.5
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 3.0e-13 81.6 364 26.9
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 3.0e-13 81.6 322 28.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 3.0e-13 81.6 322 28.0
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.0e-13 81.6 315 29.8
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 7.4e-12 77.0 436 24.3
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.3e-08 66.2 271 29.5
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 5.5e-07 60.8 590 24.6


User provided reference genes

Program Settings