Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 1.5e-147 526.2 265 100.0
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 4.8e-106 388.3 265 76.6
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.2e-101 373.6 265 74.0
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.6e-101 373.2 265 72.5
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 8.6e-95 350.9 262 69.5
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 8.0e-93 344.4 260 68.8
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 3.6e-85 318.9 259 64.1
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.3e-84 316.2 260 61.9
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 3.1e-84 315.8 259 62.2
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.1e-84 315.8 258 62.4
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 5.2e-84 315.1 251 63.3
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 5.8e-83 311.6 258 61.2
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 9.8e-83 310.8 261 62.5
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.3e-82 310.5 203 73.9
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 3.7e-82 308.9 257 61.9
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 6.4e-82 308.1 259 62.5
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 6.4e-82 308.1 232 65.9
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 6.4e-82 308.1 258 60.5
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.4e-81 307.0 260 60.0
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.4e-81 307.0 258 61.6
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.4e-81 307.0 258 61.2
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.4e-81 306.2 258 60.9
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.4e-81 306.2 258 61.2
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 9.2e-81 304.3 258 60.1
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.2e-80 303.9 255 63.5
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.6e-80 303.5 257 59.5
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 2.0e-80 303.1 258 61.6
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 2.0e-80 303.1 203 72.4
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 2.7e-80 302.8 258 59.3
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 2.7e-80 302.8 257 59.9
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 3.5e-80 302.4 259 60.6
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 3.5e-80 302.4 258 59.3
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 6.0e-80 301.6 204 72.5
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.3e-79 300.4 255 59.6
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 1.3e-79 300.4 259 59.8
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.3e-79 300.4 255 61.2
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.7e-79 300.1 255 59.2
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 2.3e-79 299.7 204 71.6
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.0e-79 299.3 204 72.1
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.1e-78 297.4 204 71.6
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.1e-78 297.4 204 71.6
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.5e-78 297.0 204 71.1
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 1.5e-78 297.0 259 58.7
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.9e-78 296.6 259 60.2
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 2.5e-78 296.2 257 58.0
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 3.3e-78 295.8 258 58.5
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 3.3e-78 295.8 257 58.0
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 4.3e-78 295.4 259 59.8
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.6e-77 293.5 259 57.9
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 2.8e-77 292.7 202 67.8
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 4.7e-77 292.0 254 58.3
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 1.1e-76 290.8 257 57.2
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.8e-76 290.0 289 54.0
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 2.3e-76 289.7 202 68.3
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 1.2e-75 287.3 258 55.8
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 2.6e-75 286.2 253 58.1
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 4.4e-75 285.4 258 57.4
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 7.5e-75 284.6 199 68.3
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.8e-75 284.3 257 57.6
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.7e-74 283.5 258 57.8
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 1.7e-74 283.5 240 60.0
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 4.9e-74 282.0 255 55.7
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 6.4e-74 281.6 257 57.2
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 8.3e-74 281.2 206 67.5
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 8.3e-74 281.2 257 56.4
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.1e-73 280.8 255 56.9
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.4e-73 280.4 189 72.0
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.9e-73 280.0 204 67.6
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.9e-73 280.0 184 74.5
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.4e-73 279.6 254 56.7
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 3.2e-73 279.3 257 55.6
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 3.2e-73 279.3 259 58.3
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 3.2e-73 279.3 279 54.1
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 4.1e-73 278.9 255 56.5
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 1.6e-72 276.9 239 59.8
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 4.6e-72 275.4 200 67.0
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 6.0e-72 275.0 200 66.5
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 7.8e-72 274.6 187 70.6
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 7.8e-72 274.6 230 61.3
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.7e-71 273.5 187 70.6
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 5.1e-71 271.9 200 65.0
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.9e-70 270.0 255 54.1
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 3.3e-70 269.2 231 61.0
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 3.3e-70 269.2 254 55.1
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 5.6e-70 268.5 255 53.7
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 7.3e-70 268.1 255 53.3
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 7.3e-70 268.1 254 54.7
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 3.6e-69 265.8 255 54.5
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.4e-68 263.8 224 62.9
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.8e-68 263.5 200 65.0
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 5.2e-68 261.9 253 53.4
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 8.9e-68 261.2 255 54.1
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 1.5e-67 260.4 200 64.0
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 9.2e-65 251.1 237 57.0
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 4.7e-61 238.8 200 61.5
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 6.8e-60 235.0 171 66.7
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 1.5e-59 233.8 228 53.1
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 7.6e-59 231.5 173 69.9
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 9.9e-59 231.1 244 54.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.3e-58 230.7 228 52.2
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.1e-57 227.6 206 56.8
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.4e-57 227.3 229 51.1
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.9e-57 226.9 254 51.2
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 5.4e-57 225.3 229 50.7
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 1.6e-56 223.8 229 51.1
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 1.6e-56 223.8 229 51.1
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 6.6e-55 218.4 171 62.6
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.5e-54 217.2 255 46.7
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.5e-54 217.2 244 50.4
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 6.2e-53 211.8 198 53.5
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 6.2e-53 211.8 255 46.7
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 6.9e-52 208.4 151 68.2
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 9.0e-52 208.0 204 54.9
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.5e-51 207.2 259 43.2
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.6e-51 206.5 259 43.6
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.4e-51 206.1 261 43.7
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 3.8e-50 202.6 153 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.1e-49 198.4 195 51.8
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 6.0e-48 195.3 254 46.1
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-46 191.0 258 41.1
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-45 187.6 202 45.5
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 2.1e-45 186.8 173 61.3
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 8.1e-45 184.9 112 78.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.5e-43 179.1 203 49.8
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.4e-42 175.3 173 53.2
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.4e-41 174.1 201 46.8
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.9e-41 173.7 156 60.3
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.6e-40 169.1 109 73.4
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 6.0e-40 168.7 208 49.5
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.3e-37 161.0 188 48.9
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.8e-37 159.8 202 43.1
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 3.1e-36 156.4 103 71.8
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 9.0e-36 154.8 238 40.8
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.3e-34 151.0 105 71.4
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.5e-33 146.7 113 61.1
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 7.1e-33 145.2 240 40.4
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 2.7e-32 143.3 251 41.4
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.3e-31 141.0 138 52.9
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 7.4e-30 135.2 151 49.0
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.7e-29 132.9 166 48.2
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 2.4e-28 130.2 207 36.2
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 6.7e-23 112.1 187 36.4
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 9.7e-22 108.2 99 54.5
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.1e-17 94.7 67 67.2
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 3.2e-17 93.2 108 44.4
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.2e-13 80.5 72 52.8
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-12 77.4 86 41.9
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.0e-10 71.6 72 50.0
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-08 64.7 61 50.8
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 1.6e-08 64.3 110 34.5
FAN14G1154 Fragaria x ananassa HOM05D004805 ORTHO05D005756 9.7e-06 55.1 80 40.0


User provided reference genes

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