Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 4.2e-127 458.0 225 100.0
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 8.8e-109 397.1 259 78.0
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 2.7e-97 359.0 268 69.4
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 2.6e-92 342.4 265 64.5
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.5e-87 326.6 266 63.5
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 2.8e-86 322.4 212 72.6
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 8.1e-86 320.9 278 60.8
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.1e-85 320.5 247 66.8
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.4e-85 320.1 249 64.7
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 1.8e-85 319.7 202 74.3
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 8.9e-85 317.4 288 58.7
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.7e-83 313.2 253 62.5
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.7e-83 313.2 266 60.5
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 3.7e-83 312.0 268 60.8
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.9e-83 311.6 258 62.0
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.9e-83 311.6 192 77.1
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 6.4e-83 311.2 173 84.4
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 8.3e-83 310.8 241 64.3
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 1.1e-82 310.5 258 61.2
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.1e-82 310.5 260 61.9
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.4e-82 310.1 173 84.4
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 1.4e-82 310.1 193 78.2
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 1.4e-82 310.1 269 60.2
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 1.9e-82 309.7 173 85.0
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.9e-82 309.7 265 60.0
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 2.4e-82 309.3 194 76.8
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.4e-82 309.3 253 62.1
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 2.4e-82 309.3 269 59.1
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 3.2e-82 308.9 190 78.4
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 3.2e-82 308.9 253 61.7
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 3.2e-82 308.9 260 61.5
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.1e-82 308.5 185 78.4
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.1e-82 308.5 185 78.4
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 4.1e-82 308.5 262 60.7
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 4.1e-82 308.5 262 60.7
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 4.1e-82 308.5 188 78.7
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 7.1e-82 307.8 174 83.9
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 9.2e-82 307.4 265 60.0
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 9.2e-82 307.4 272 60.7
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 2.1e-81 306.2 271 59.8
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 2.7e-81 305.8 243 62.1
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 3.5e-81 305.4 195 74.9
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 3.5e-81 305.4 249 63.9
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 4.6e-81 305.1 173 80.9
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 4.6e-81 305.1 194 76.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 6.0e-81 304.7 173 80.9
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 7.8e-81 304.3 262 61.8
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.3e-80 303.5 192 76.0
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 1.3e-80 303.5 195 74.9
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 5.1e-80 301.6 188 76.1
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 5.1e-80 301.6 249 61.8
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.1e-79 300.4 191 73.8
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.3e-79 298.9 192 73.4
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 4.3e-79 298.5 175 79.4
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 7.3e-79 297.7 177 78.5
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 7.3e-79 297.7 247 60.7
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 1.6e-78 296.6 248 61.3
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 2.1e-78 296.2 250 62.0
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 2.1e-78 296.2 260 60.8
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 2.1e-78 296.2 173 80.9
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 2.1e-78 296.2 173 80.3
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 2.8e-78 295.8 173 79.8
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 3.6e-78 295.4 175 77.7
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 6.2e-78 294.7 240 61.7
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 8.1e-78 294.3 240 62.5
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.4e-77 293.5 178 77.5
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.3e-77 292.7 248 60.5
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 4.0e-77 292.0 263 58.9
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 5.2e-77 291.6 187 74.3
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 1.2e-76 290.4 173 76.9
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.5e-76 290.0 174 79.9
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 9.9e-76 287.3 170 78.8
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 2.9e-75 285.8 189 71.4
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.2e-73 280.4 171 77.2
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.6e-73 280.0 173 76.3
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 2.1e-73 279.6 188 71.3
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 2.7e-73 279.3 176 74.4
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 3.5e-73 278.9 187 70.6
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 4.6e-73 278.5 241 56.8
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 6.0e-73 278.1 173 74.0
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 6.0e-73 278.1 173 75.1
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 6.0e-73 278.1 173 75.1
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 6.0e-73 278.1 173 75.1
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.0e-72 277.3 173 74.6
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.0e-72 277.3 173 75.1
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 1.3e-72 276.9 173 75.7
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 3.0e-72 275.8 177 71.8
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 3.9e-72 275.4 243 58.4
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 2.5e-71 272.7 185 69.2
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 5.6e-71 271.6 188 67.0
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 5.6e-71 271.6 172 74.4
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 2.8e-70 269.2 155 80.6
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 2.0e-68 263.1 177 70.6
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 2.4e-66 256.1 173 68.8
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 2.7e-65 252.7 143 81.8
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.8e-62 242.7 271 52.0
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 1.3e-59 233.8 194 62.9
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 4.2e-58 228.8 177 59.9
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 7.9e-57 224.6 130 80.8
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 8.7e-56 221.1 203 58.1
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.3e-55 218.8 134 80.6
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.3e-54 217.2 134 79.9
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 3.4e-52 209.1 135 77.8
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 9.3e-42 174.5 115 75.7
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 2.6e-36 156.4 97 73.2
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 2.6e-36 156.4 97 73.2
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 5.9e-36 155.2 172 43.6
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.0e-35 154.5 172 43.0
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.7e-35 153.7 99 74.7
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 2.2e-35 153.3 208 44.7
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 7.9e-33 144.8 138 55.8
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 7.9e-33 144.8 179 42.5
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 1.0e-32 144.4 182 41.8
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.7e-30 136.0 128 56.2
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 4.1e-29 132.5 105 64.8
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.1e-26 124.4 91 64.8
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 1.8e-24 117.1 119 56.3
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 1.8e-24 117.1 119 56.3
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 5.1e-24 115.5 70 74.3
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 1.7e-22 110.5 119 53.8
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.2e-22 110.2 63 76.2
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.5e-20 102.4 49 93.9
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.9e-19 99.8 56 83.9
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 4.7e-17 92.4 113 51.3
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.3e-16 90.1 57 78.9
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 6.7e-16 88.6 118 49.2
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 6.7e-16 88.6 118 49.2
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 1.1e-10 71.2 43 79.1
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 2.1e-09 67.0 48 62.5
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 1.8e-08 63.9 106 42.5
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 5.2e-08 62.4 38 78.9
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 2.6e-07 60.1 35 80.0


User provided reference genes

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