Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11557 Vaccinium macrocarpon HOM05D003834 ORTHO05D004483 1.4e-117 426.4 225 100.0
Actinidia05022 Actinidia chinensis HOM05D001580 ORTHO05D001517 5.1e-48 195.3 194 58.8
Actinidia00090 Actinidia chinensis HOM05D003834 ORTHO05D004483 2.5e-47 193.0 194 57.7
Actinidia05029 Actinidia chinensis HOM05D003834 ORTHO05D004483 3.7e-46 189.1 194 57.2
Dinv40838 Davidia involucrata HOM05D003834 ORTHO05D004483 8.2e-38 161.4 194 49.0
CSS0019206 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 1.2e-36 157.5 220 49.1
CSS0039625 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 1.4e-34 150.6 220 46.4
Hma1.2p1_0036F.1_g022680 Hydrangea macrophylla HOM05D003834 ORTHO05D004483 2.3e-32 143.3 212 46.2
TAR629G2412 Trochodendron aralioides HOM05D003834 ORTHO05D004483 3.7e-30 136.0 193 46.1
TAR627G0963 Trochodendron aralioides HOM05D003834 ORTHO05D004483 3.1e-29 132.9 186 47.8
Lj8A176T68 Lonicera japonica HOM05D003834 ORTHO05D004483 6.9e-29 131.7 193 47.7
Nitab4.5_0003612g0010 Nicotiana tabacum HOM05D003834 ORTHO05D004483 2.0e-28 130.2 196 47.4
Haze_09794 Corylus avellana HOM05D003834 ORTHO05D004483 1.0e-27 127.9 196 44.9
QL08p005445 Quercus lobata HOM05D003834 ORTHO05D004483 1.0e-27 127.9 195 41.5
Cfa020225 Carpinus fangiana HOM05D003834 ORTHO05D004483 5.0e-27 125.6 195 43.1
CiPaw.12G136300 Carya illinoinensis HOM05D003834 ORTHO05D004483 5.5e-26 122.1 150 51.3
Dinv05352 Davidia involucrata HOM05D003834 ORTHO05D004483 2.1e-25 120.2 193 42.0
Glyma.14G015600 Glycine max HOM05D003834 ORTHO05D004483 2.1e-25 120.2 111 55.9
Manes.03G138400 Manihot esculenta HOM05D003834 ORTHO05D004483 2.1e-25 120.2 188 45.7
Nn1g03233 Nelumbo nucifera HOM05D003834 ORTHO05D004483 2.1e-25 120.2 193 43.0
PGR031G3702 Punica granatum HOM05D003834 ORTHO05D004483 2.1e-25 120.2 96 63.5
MD11G1204000 Malus domestica HOM05D003834 ORTHO05D004483 3.6e-25 119.4 107 60.7
Cc05_g14760 Coffea canephora HOM05D003834 ORTHO05D004483 4.6e-25 119.0 207 44.9
Lsat_1_v5_gn_7_113161 Lactuca sativa HOM05D003834 ORTHO05D004483 1.8e-24 117.1 191 44.5
Nn1g07452 Nelumbo nucifera HOM05D003834 ORTHO05D004483 2.3e-24 116.7 186 43.0
Prupe.4G235000 Prunus persica HOM05D003834 ORTHO05D004483 2.3e-24 116.7 146 48.6
MBI16_g26376_MAGBIO Magnolia biondii HOM05D003834 ORTHO05D004483 3.0e-24 116.3 195 43.6
MD03G1188400 Malus domestica HOM05D003834 ORTHO05D004483 3.0e-24 116.3 114 57.9
Nitab4.5_0000461g0120 Nicotiana tabacum HOM05D003834 ORTHO05D004483 3.9e-24 115.9 196 43.4
RcHm_v2.0_Chr5g0042791 Rosa chinensis HOM05D003834 ORTHO05D004483 3.9e-24 115.9 196 41.8
Phvul.008G276000 Phaseolus vulgaris HOM05D003834 ORTHO05D004483 5.1e-24 115.5 106 56.6
Eucgr.F03700 Eucalyptus grandis HOM05D003834 ORTHO05D004483 8.8e-24 114.8 190 38.9
VMungo0647G1153 Vigna mungo HOM05D003834 ORTHO05D004483 1.1e-23 114.4 110 54.5
TWI38G0150 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 3.3e-23 112.8 128 50.0
arahy.Tifrunner.gnm1.ann1.08QZGW Arachis hypogaea HOM05D003834 ORTHO05D004483 5.7e-23 112.1 195 40.0
Glyma.02G298200 Glycine max HOM05D003834 ORTHO05D004483 5.7e-23 112.1 101 60.4
Sc16g0007940 Simmondsia chinensis HOM05D003834 ORTHO05D004483 5.7e-23 112.1 103 59.2
FAN25G0041 Fragaria x ananassa HOM05D003834 ORTHO05D004483 7.4e-23 111.7 200 44.5
arahy.Tifrunner.gnm1.ann1.BBM6FL Arachis hypogaea HOM05D003834 ORTHO05D004483 9.7e-23 111.3 195 39.5
FAN25G1232 Fragaria x ananassa HOM05D003834 ORTHO05D004483 9.7e-23 111.3 192 45.3
Sabra16G0238600 Salix brachista HOM05D003834 ORTHO05D004483 1.3e-22 110.9 196 40.3
Potri.001G362100 Populus trichocarpa HOM05D003834 ORTHO05D004483 1.7e-22 110.5 166 44.0
PGSC0003DMG400022184 Solanum tuberosum HOM05D003834 ORTHO05D004483 2.8e-22 109.8 190 39.5
MSTRG.15783 Avicennia marina HOM05D003834 ORTHO05D004483 3.7e-22 109.4 204 39.7
TPR.G14161 Trifolium pratense HOM05D003834 ORTHO05D004483 3.7e-22 109.4 112 54.5
Medtr5g094740 Medicago truncatula HOM05D003834 ORTHO05D004483 4.8e-22 109.0 112 54.5
Ciclev10007688m.g Citrus clementina HOM05D003834 ORTHO05D004483 6.3e-22 108.6 199 40.7
CAN.G337.23 Capsicum annuum HOM05D003834 ORTHO05D004483 8.2e-22 108.2 111 55.0
FvH4_3g24130 Fragaria vesca HOM05D003834 ORTHO05D004483 8.2e-22 108.2 200 42.5
Lalb_Chr04g0247941 Lupinus albus HOM05D003834 ORTHO05D004483 8.2e-22 108.2 119 52.1
Ca_06377_v3 Cicer arietinum L. HOM05D003834 ORTHO05D004483 1.1e-21 107.8 104 56.7
FAN11G3562 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.4e-21 107.5 200 41.5
Cpa.g.sc12.186 Carica papaya HOM05D003834 ORTHO05D004483 2.4e-21 106.7 92 59.8
LjContig00272g0006391 Lotus japonicus HOM05D003834 ORTHO05D004483 2.4e-21 106.7 117 52.1
Sopen07g033510 Solanum pennellii HOM05D003834 ORTHO05D004483 2.4e-21 106.7 194 40.7
Psat2g008920 Pisum sativum HOM05D003834 ORTHO05D004483 3.1e-21 106.3 218 37.6
FAN21G0517 Fragaria x ananassa HOM05D003834 ORTHO05D004483 4.1e-21 105.9 193 42.5
Lalb_Chr17g0348801 Lupinus albus HOM05D003834 ORTHO05D004483 4.1e-21 105.9 180 37.8
Solyc07g065310.3 Solanum lycopersicum HOM05D003834 ORTHO05D004483 4.1e-21 105.9 190 40.5
Lj6g0012228 Lotus japonicus HOM05D003834 ORTHO05D004483 5.3e-21 105.5 89 64.0
MSTRG.6988 Avicennia marina HOM05D003834 ORTHO05D004483 6.9e-21 105.1 187 42.8
BraA03t12955Z Brassica rapa HOM05D003834 ORTHO05D004483 6.9e-21 105.1 190 45.3
PSO675G1367 Papaver somniferum HOM05D003834 ORTHO05D004483 6.9e-21 105.1 182 42.3
AL1G64090 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 1.2e-20 104.4 182 43.4
PSO541G6272 Papaver somniferum HOM05D003834 ORTHO05D004483 1.2e-20 104.4 182 42.3
Gorai.002G097000 Gossypium raimondii HOM05D003834 ORTHO05D004483 1.5e-20 104.0 194 39.7
Gohir.D01G073900 Gossypium hirsutum HOM05D003834 ORTHO05D004483 2.0e-20 103.6 194 39.7
PSO210G2219 Papaver somniferum HOM05D003834 ORTHO05D004483 2.0e-20 103.6 184 41.3
CANSAT11G2090 Cannabis sativa HOM05D003834 ORTHO05D004483 2.6e-20 103.2 218 37.2
FAN16G1958 Fragaria x ananassa HOM05D003834 ORTHO05D004483 2.6e-20 103.2 196 41.3
EL10Ac4g07610 Beta vulgaris HOM05D003834 ORTHO05D004483 3.4e-20 102.8 113 55.8
Gorai.007G310900 Gossypium raimondii HOM05D003834 ORTHO05D004483 3.4e-20 102.8 187 38.5
Ah.04g166460 Amaranthus hybridus HOM05D003834 ORTHO05D004483 4.5e-20 102.4 135 46.7
Carub.0001s4454 Capsella rubella HOM05D003834 ORTHO05D004483 4.5e-20 102.4 128 49.2
TWI39G0575 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 4.5e-20 102.4 189 38.6
PSO302G0051 Papaver somniferum HOM05D003834 ORTHO05D004483 5.9e-20 102.1 178 40.4
Duzib170G1101 Durio zibethinus HOM05D003834 ORTHO05D004483 7.7e-20 101.7 190 38.4
Gohir.A01G087800 Gossypium hirsutum HOM05D003834 ORTHO05D004483 1.0e-19 101.3 194 39.2
Aa31LG8G300 Aethionema arabicum HOM05D003834 ORTHO05D004483 1.3e-19 100.9 130 46.9
AT1G55930 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 1.3e-19 100.9 182 40.7
CARHR087650 Cardamine hirsuta HOM05D003834 ORTHO05D004483 1.3e-19 100.9 132 48.5
SalBow8G1137 Salvia bowleyana HOM05D003834 ORTHO05D004483 1.3e-19 100.9 191 41.4
Aqoxy4G02225 Aquilegia oxysepala HOM05D003834 ORTHO05D004483 1.7e-19 100.5 95 58.9
AT3G13070 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 1.7e-19 100.5 132 49.2
BcaNung05266 Brassica carinata HOM05D003834 ORTHO05D004483 2.9e-19 99.8 145 49.0
A03p38030 Brassica napus HOM05D000121 ORTHO05D004483 2.9e-19 99.8 101 57.4
Migut.M01671 Erythranthe guttata HOM05D003834 ORTHO05D004483 2.9e-19 99.8 191 42.4
HanXRQChr11g0333951 Helianthus annuus HOM05D003834 ORTHO05D004483 3.8e-19 99.4 180 41.7
AUR62017064 Chenopodium quinoa HOM05D003834 ORTHO05D004483 5.0e-19 99.0 121 50.4
BcaC05g29213 Brassica carinata HOM05D003834 ORTHO05D004483 6.5e-19 98.6 146 45.2
C05p54850 Brassica napus HOM05D003834 ORTHO05D004483 6.5e-19 98.6 146 45.2
BolC5t34156H Brassica oleracea HOM05D003834 ORTHO05D004483 6.5e-19 98.6 146 45.2
AUR62040651 Chenopodium quinoa HOM05D003834 ORTHO05D004483 8.5e-19 98.2 121 49.6
Oeu057086.1 Olea europaea HOM05D003834 ORTHO05D004483 8.5e-19 98.2 96 60.4
AL3G24810 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 1.1e-18 97.8 132 47.7
BcaC01g04008 Brassica carinata HOM05D003834 ORTHO05D004483 1.4e-18 97.4 134 49.3
A05p36450 Brassica napus HOM05D003834 ORTHO05D004483 1.4e-18 97.4 147 46.9
BraA05t22447Z Brassica rapa HOM05D003834 ORTHO05D004483 1.4e-18 97.4 147 46.9
Gohir.A01G093425 Gossypium hirsutum HOM05D003834 ORTHO05D004483 1.4e-18 97.4 90 57.8
Sp1g41540 Schrenkiella parvula HOM05D003834 ORTHO05D004483 1.4e-18 97.4 187 40.6
Thecc.07G019500 Theobroma cacao HOM05D003834 ORTHO05D004483 1.9e-18 97.1 206 35.4
BcaB06g25489 Brassica carinata HOM05D003834 ORTHO05D004483 2.5e-18 96.7 150 42.7
ClCG09G021080 Citrullus lanatus HOM05D003834 ORTHO05D004483 2.5e-18 96.7 119 47.1
MELO3C024905.2 Cucumis melo HOM05D003834 ORTHO05D004483 2.5e-18 96.7 119 47.1
Sp3g11240 Schrenkiella parvula HOM05D003834 ORTHO05D004483 2.5e-18 96.7 155 43.9
CsaV3_7G018550 Cucumis sativus L. HOM05D003834 ORTHO05D004483 3.2e-18 96.3 209 35.4
Sed0024668 Sechium edule HOM05D003834 ORTHO05D004483 3.2e-18 96.3 166 41.0
BolC3t16884H Brassica oleracea HOM05D003834 ORTHO05D004483 4.2e-18 95.9 134 48.5
Carub.0003s1241 Capsella rubella HOM05D003834 ORTHO05D004483 9.4e-18 94.7 132 47.0
Thhalv10020238m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 1.2e-17 94.4 132 47.7
SGA_v2.0_scaffold168G38536 Striga asiatica HOM05D003834 ORTHO05D004483 1.2e-17 94.4 184 41.8
unitig_85.g27343 Utricularia gibba HOM05D003834 ORTHO05D004483 1.2e-17 94.4 93 58.1
C03p46120 Brassica napus HOM05D003834 ORTHO05D004483 1.6e-17 94.0 97 56.7
Gohir.A13G134401 Gossypium hirsutum HOM05D003834 ORTHO05D004483 2.1e-17 93.6 192 37.0
Lj1A793T50 Lonicera japonica HOM05D003834 ORTHO05D004483 2.1e-17 93.6 104 56.7
Thhalv10011303m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 3.6e-17 92.8 89 59.6
Sed0001420 Sechium edule HOM05D003834 ORTHO05D004483 4.7e-17 92.4 214 36.4
THA.LOC104822741 Tarenaya hassleriana HOM05D003834 ORTHO05D004483 6.1e-17 92.0 174 38.5
CiPaw.11G201400 Carya illinoinensis HOM05D003834 ORTHO05D004483 7.9e-17 91.7 79 59.5
SGA_v2.0_scaffold171G38885 Striga asiatica HOM05D003834 ORTHO05D004483 1.0e-16 91.3 184 40.8
ECA236G2134 Erigeron canadensis HOM05D003834 ORTHO05D004483 3.0e-16 89.7 106 49.1
Gohir.A02G077901 Gossypium hirsutum HOM05D003834 ORTHO05D004483 3.0e-16 89.7 90 54.4
DCAR_019235 Daucus carota HOM05D003834 ORTHO05D004483 8.8e-16 88.2 205 35.6
Gorai.013G154900 Gossypium raimondii HOM05D003834 ORTHO05D004483 3.3e-15 86.3 79 53.2
unitig_85.g27344 Utricularia gibba HOM05D000121 ORTHO05D000102 9.7e-15 84.7 43 93.0
DCAR_012909 Daucus carota HOM05D003834 ORTHO05D004483 1.7e-14 84.0 173 42.8
COL.COLO4_09798 Corchorus olitorius HOM05D003834 ORTHO05D004483 2.8e-14 83.2 79 53.2
RcHm_v2.0_Chr5g0043121 Rosa chinensis HOM05D003834 ORTHO05D004483 2.8e-14 83.2 87 56.3
ATR0712G125 Amborella trichopoda HOM05D003834 ORTHO05D004483 1.1e-13 81.3 185 37.8
GSVIVG01037786001 Vitis vinifera HOM05D003834 ORTHO05D004483 1.1e-13 81.3 48 79.2
HanXRQChr04g0126521 Helianthus annuus HOM05D003834 ORTHO05D004483 2.0e-12 77.0 117 46.2
Os03g0593200 Oryza sativa ssp. japonica HOM05D003834 ORTHO05D004483 2.6e-12 76.6 90 48.9
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 4.5e-12 75.9 42 81.0
HPP92_024890 Vanilla planifolia HOM05D003834 ORTHO05D004483 4.5e-12 75.9 44 81.8
SMO367G1292 Selaginella moellendorffii HOM05D003834 ORTHO05D004483 5.9e-12 75.5 57 64.9
AagrBONN_evm.TU.Sc2ySwM_344.3938 Anthoceros agrestis HOM05D003834 ORTHO05D004483 7.7e-12 75.1 42 81.0
Zm00001eb049810 Zea mays HOM05D003834 ORTHO05D004483 7.7e-12 75.1 42 83.3
SEGI_11677 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 1.0e-11 74.7 85 52.9
QL08p006272 Quercus lobata HOM05D003834 ORTHO05D004483 1.7e-11 73.9 170 30.6
SEGI_18466 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 1.7e-11 73.9 108 43.5
RcHm_v2.0_Chr5g0043141 Rosa chinensis HOM05D003834 ORTHO05D004483 3.8e-11 72.8 75 58.7
Lsat_1_v5_gn_7_95440 Lactuca sativa HOM05D003834 ORTHO05D004483 1.5e-10 70.9 130 40.8
Pp3c1_38160 Physcomitrium patens HOM05D003834 ORTHO05D004483 1.9e-10 70.5 59 59.3
CDE10G0297 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 2.5e-10 70.1 39 84.6
Pp3c10_7850 Physcomitrium patens HOM05D003834 ORTHO05D004483 2.5e-10 70.1 42 78.6
Mapoly0112s0016 Marchantia polymorpha HOM05D003834 ORTHO05D004483 3.2e-10 69.7 41 80.5
CBR_g22294 Chara braunii HOM05D003834 ORTHO05D004483 8.0e-09 65.1 46 65.2
Pp3c2_3830 Physcomitrium patens HOM05D003834 ORTHO05D004483 8.0e-09 65.1 95 42.1
ECA236G2833 Erigeron canadensis HOM05D003834 ORTHO05D004483 1.0e-08 64.7 38 86.8
RcHm_v2.0_Chr5g0043101 Rosa chinensis HOM05D003834 ORTHO05D004483 1.7e-06 57.4 166 31.9


User provided reference genes

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