Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.3e-110 403.3 235 100.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.9e-66 256.5 214 67.8
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.6e-52 210.3 102 99.0
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.1e-52 208.4 223 56.5
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 7.4e-50 201.4 209 56.5
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 4.8e-49 198.7 227 54.2
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.2e-49 198.0 227 55.9
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.4e-48 197.2 197 56.3
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.8e-48 196.8 197 55.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 7.0e-48 194.9 227 54.6
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 7.0e-48 194.9 220 52.7
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 9.1e-48 194.5 182 59.3
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 9.1e-48 194.5 220 52.3
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.0e-47 193.4 216 53.7
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.0e-47 193.4 214 53.7
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 5.9e-47 191.8 216 53.2
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.0e-46 191.0 226 51.8
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.7e-46 190.3 204 53.9
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.2e-46 189.9 219 58.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.9e-46 189.5 195 55.9
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 2.9e-46 189.5 214 52.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.8e-46 189.1 215 51.6
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 5.0e-46 188.7 222 51.8
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.5e-46 188.3 216 52.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.5e-46 188.0 230 53.5
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.5e-46 188.0 230 53.5
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-45 187.6 209 55.5
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.5e-45 187.2 162 61.7
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-45 186.8 230 53.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.9e-45 186.8 215 54.0
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.2e-45 186.0 222 52.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.2e-45 185.7 190 54.7
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.2e-45 185.7 185 55.7
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 5.5e-45 185.3 224 51.8
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.2e-44 184.1 217 51.6
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.2e-44 184.1 211 51.7
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.1e-44 183.3 218 51.4
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.1e-44 183.3 216 52.3
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.7e-44 183.0 199 54.3
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 3.6e-44 182.6 191 53.9
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 3.6e-44 182.6 215 53.0
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.7e-44 182.2 171 56.7
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 4.7e-44 182.2 214 51.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 4.7e-44 182.2 222 50.5
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 6.1e-44 181.8 160 60.0
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 6.1e-44 181.8 229 52.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 6.1e-44 181.8 213 50.7
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 8.0e-44 181.4 162 59.9
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 8.0e-44 181.4 160 60.6
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.0e-43 181.0 198 54.0
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.0e-43 181.0 221 51.1
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.4e-43 180.6 160 60.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-43 180.6 162 59.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-43 180.6 160 60.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-43 180.6 160 60.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.4e-43 180.6 160 60.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.4e-43 180.6 160 60.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.4e-43 180.6 162 59.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.4e-43 180.6 223 50.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.4e-43 180.6 221 50.2
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.8e-43 180.3 162 58.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.8e-43 180.3 216 51.9
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.8e-43 180.3 190 53.7
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.8e-43 180.3 213 50.2
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.3e-43 179.9 160 59.4
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.0e-43 179.5 162 58.6
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 4.0e-43 179.1 185 53.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.2e-43 178.7 162 57.4
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 5.2e-43 178.7 213 50.7
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 5.2e-43 178.7 214 56.1
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 5.2e-43 178.7 210 53.3
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 6.7e-43 178.3 210 53.3
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 6.7e-43 178.3 210 53.3
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.8e-43 177.9 214 56.5
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.1e-42 177.6 160 59.4
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.1e-42 177.6 220 50.5
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.1e-42 177.6 222 52.3
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.1e-42 177.6 113 77.9
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.5e-42 177.2 114 76.3
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.0e-42 176.8 212 51.9
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.0e-42 176.8 212 51.9
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.0e-42 176.8 212 51.9
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.0e-42 176.8 205 55.6
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.6e-42 176.4 220 49.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 3.3e-42 176.0 113 73.5
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 4.4e-42 175.6 222 50.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 4.4e-42 175.6 198 50.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.4e-42 175.6 207 52.2
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-42 175.3 208 51.9
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 5.7e-42 175.3 216 49.1
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.5e-42 174.9 217 50.7
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.5e-42 174.9 208 51.9
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 7.5e-42 174.9 215 49.8
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 9.7e-42 174.5 216 50.9
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 9.7e-42 174.5 214 51.4
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.3e-41 174.1 222 50.5
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.3e-41 174.1 211 52.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.7e-41 173.7 178 54.5
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.7e-41 173.7 214 49.5
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 2.2e-41 173.3 213 50.2
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 4.8e-41 172.2 219 50.7
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 4.8e-41 172.2 213 49.8
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 4.8e-41 172.2 214 51.9
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 6.3e-41 171.8 210 50.5
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.1e-40 171.0 112 71.4
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.4e-40 169.9 112 71.4
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 5.3e-40 168.7 148 58.8
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.2e-39 167.5 210 48.1
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.0e-39 166.8 219 46.6
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 2.0e-39 166.8 219 49.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.7e-39 166.4 216 50.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.7e-39 166.4 205 51.7
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.5e-39 166.0 223 46.6
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 3.8e-38 162.5 212 51.4
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 6.5e-38 161.8 101 81.2
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.9e-37 160.2 277 41.5
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.2e-37 159.5 112 69.6
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.2e-37 159.5 217 45.6
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-36 157.1 236 48.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.6e-36 157.1 112 68.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 3.6e-36 156.0 206 51.0
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.0e-36 154.8 113 67.3
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.8e-35 151.4 214 48.1
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 3.5e-31 139.4 100 62.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.5e-31 139.4 215 42.3
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.5e-31 139.4 215 42.3
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.0e-30 137.9 93 72.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.0e-30 137.9 100 61.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.7e-30 137.1 99 60.6
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 5.0e-30 135.6 172 48.3
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.0e-30 135.6 100 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 3.2e-29 132.9 100 60.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 4.7e-28 129.0 165 50.3
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.0e-27 127.9 99 54.5
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.5e-26 124.0 111 59.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 4.4e-26 122.5 80 77.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.7e-25 120.6 93 58.1
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-22 111.3 66 78.8
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-22 111.3 66 78.8
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 5.6e-21 105.5 215 38.1
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.3e-11 73.6 50 70.0
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 9.8e-10 68.2 49 65.3
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.2e-09 67.0 143 39.2
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.9e-09 66.6 145 43.4


User provided reference genes

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