Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 2.2e-140 502.3 250 100.0
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 2.0e-117 426.0 251 84.9
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 1.3e-100 370.2 251 73.3
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 5.1e-97 358.2 256 72.3
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 8.6e-97 357.5 256 72.3
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 1.9e-80 303.1 240 64.6
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 1.2e-77 293.9 245 62.4
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 7.1e-75 284.6 234 62.8
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 9.3e-75 284.3 256 58.2
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 7.9e-74 281.2 239 59.8
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 3.0e-73 279.3 245 61.2
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 5.1e-73 278.5 235 60.9
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 5.1e-73 278.5 250 58.4
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 1.5e-72 276.9 251 59.0
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 2.5e-72 276.2 253 56.9
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 1.3e-71 273.9 210 64.3
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 4.8e-71 271.9 255 55.3
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 4.8e-71 271.9 246 57.3
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 4.8e-71 271.9 253 58.9
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 1.8e-70 270.0 241 60.2
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 2.4e-70 269.6 255 58.8
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 5.3e-70 268.5 250 58.8
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 6.9e-70 268.1 235 59.1
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 2.6e-69 266.2 251 57.8
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 3.4e-69 265.8 256 57.0
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 1.7e-68 263.5 216 61.6
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 6.4e-68 261.5 247 55.1
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 6.4e-68 261.5 251 59.0
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 2.4e-67 259.6 221 61.1
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 4.2e-67 258.8 244 54.9
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 5.5e-67 258.5 251 56.2
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 9.3e-67 257.7 252 55.6
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.1e-66 256.5 286 51.7
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 7.9e-66 254.6 227 59.9
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 1.0e-65 254.2 248 56.9
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 5.1e-65 251.9 213 60.1
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 8.7e-65 251.1 255 53.7
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 1.5e-64 250.4 251 55.0
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 1.9e-64 250.0 243 57.2
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 2.5e-64 249.6 243 55.1
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 2.5e-64 249.6 287 50.5
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 2.5e-64 249.6 209 61.2
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.3e-64 249.2 273 50.9
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 1.6e-63 246.9 249 54.6
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 4.8e-63 245.4 255 54.5
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 6.2e-63 245.0 240 55.8
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 1.4e-62 243.8 215 56.3
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 4.0e-62 242.3 238 56.3
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 6.9e-62 241.5 253 53.0
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 1.5e-61 240.4 255 55.3
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 3.4e-61 239.2 252 53.2
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 7.6e-61 238.0 256 52.0
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 2.2e-60 236.5 208 57.7
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.8e-60 235.7 234 55.1
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 4.9e-60 235.3 219 57.1
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 6.5e-60 235.0 225 56.9
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 8.4e-60 234.6 206 60.7
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 3.2e-59 232.6 240 54.2
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 4.2e-59 232.3 254 52.0
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 3.5e-58 229.2 241 50.6
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 3.5e-58 229.2 219 53.9
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 4.6e-58 228.8 260 51.2
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 1.0e-57 227.6 260 51.2
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 1.3e-57 227.3 213 54.5
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 2.3e-57 226.5 205 59.5
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 3.9e-57 225.7 249 55.4
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 6.7e-57 224.9 251 51.8
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 6.7e-57 224.9 196 59.2
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.1e-56 224.2 250 50.4
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 2.5e-56 223.0 265 49.8
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 2.1e-55 219.9 247 49.0
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 4.8e-55 218.8 253 51.8
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 1.4e-54 217.2 186 60.8
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 1.4e-54 217.2 243 50.6
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 3.1e-54 216.1 257 49.8
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 2.0e-53 213.4 199 59.3
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 2.6e-53 213.0 252 50.0
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 4.5e-53 212.2 243 51.4
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 7.6e-53 211.5 259 53.3
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 2.2e-52 209.9 243 51.4
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 2.5e-51 206.5 168 60.7
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 2.5e-51 206.5 199 56.3
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 2.5e-51 206.5 238 52.5
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 3.2e-51 206.1 168 59.5
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 3.2e-51 206.1 168 59.5
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 4.2e-51 205.7 157 65.6
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 7.2e-51 204.9 173 61.3
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 1.6e-50 203.8 187 58.3
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 1.6e-50 203.8 194 55.7
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 2.7e-50 203.0 185 57.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 3.6e-50 202.6 175 59.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 4.6e-50 202.2 175 59.4
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 7.9e-50 201.4 174 59.2
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 7.9e-50 201.4 174 59.2
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 1.0e-49 201.1 239 46.9
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 1.8e-49 200.3 160 62.5
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 3.0e-49 199.5 172 59.3
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 3.9e-49 199.1 147 67.3
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 3.9e-49 199.1 227 45.4
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 1.5e-48 197.2 204 53.9
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 5.7e-48 195.3 162 60.5
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 1.3e-47 194.1 247 43.7
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 2.8e-47 193.0 205 54.1
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 4.8e-47 192.2 210 49.5
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 4.8e-47 192.2 220 47.7
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 6.3e-47 191.8 251 48.2
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 6.3e-47 191.8 241 45.6
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 5.3e-46 188.7 166 59.0
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 5.9e-37 158.7 142 55.6
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 1.0e-36 157.9 144 57.6
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 2.2e-36 156.8 194 45.4
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 2.5e-35 153.3 120 59.2
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 4.2e-35 152.5 202 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 1.8e-33 147.1 128 57.0
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 1.8e-33 147.1 163 50.3
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 1.1e-32 144.4 114 57.9
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 1.2e-29 134.4 257 37.0
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 2.0e-29 133.7 144 45.8
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 3.5e-29 132.9 123 57.7
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.0e-28 131.3 99 60.6
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 9.4e-27 124.8 83 68.7
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 2.5e-19 100.1 102 53.9
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 4.0e-17 92.8 116 44.0
PSO675G1839 Papaver somniferum HOM05D000047 ORTHO05D000044 8.3e-07 58.5 65 47.7
TAR622G0501 Trochodendron aralioides HOM05D007016 ORTHO05D008847 5.4e-06 55.8 46 56.5
Nitab4.5_0002582g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 7.0e-06 55.5 45 57.8


User provided reference genes

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