Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 4.5e-278 960.7 502 100.0
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 6.6e-205 717.6 593 70.0
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.0e-154 547.7 463 65.2
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 5.9e-153 545.0 564 60.3
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 2.8e-147 526.2 358 77.7
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.4e-143 513.8 614 53.4
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 7.2e-143 511.5 432 65.3
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.2e-142 510.8 561 56.1
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.0e-141 507.7 479 61.6
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.3e-141 506.5 547 57.8
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 3.0e-141 506.1 505 59.2
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 8.8e-141 504.6 479 60.8
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.5e-140 503.8 440 65.0
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 3.3e-140 502.7 477 61.4
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.3e-139 500.7 469 61.8
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.7e-139 500.4 443 64.3
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 2.8e-139 499.6 461 62.7
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 8.2e-139 498.0 542 55.5
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 8.2e-139 498.0 430 65.3
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 2.4e-138 496.5 543 55.8
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 4.1e-138 495.7 482 60.2
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 4.1e-138 495.7 469 61.0
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 7.0e-138 495.0 539 57.1
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 2.0e-137 493.4 541 54.9
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 3.4e-137 492.7 470 60.0
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 7.7e-137 491.5 469 61.2
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.3e-136 490.7 446 63.7
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 6.5e-136 488.4 463 61.6
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.1e-135 487.6 469 61.2
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.4e-135 487.3 545 56.1
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.5e-135 486.5 543 55.6
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 7.2e-135 485.0 547 54.7
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 1.6e-134 483.8 479 59.9
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 3.6e-134 482.6 553 54.2
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 4.7e-134 482.3 502 57.4
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 6.1e-134 481.9 446 61.7
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.0e-133 481.1 475 59.6
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.0e-133 481.1 567 53.3
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.0e-133 481.1 535 55.3
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 2.3e-133 479.9 544 55.3
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 3.0e-133 479.6 491 58.5
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 3.0e-133 479.6 538 56.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.0e-133 479.6 451 61.6
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.2e-133 478.8 467 60.2
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.7e-133 478.4 571 53.2
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.5e-132 477.2 450 61.6
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 5.7e-132 475.3 464 60.8
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 7.4e-132 474.9 491 58.7
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 7.4e-132 474.9 411 64.7
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 7.4e-132 474.9 468 59.4
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.7e-132 474.6 457 60.2
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.3e-131 474.2 488 59.4
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.3e-131 474.2 432 63.7
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.2e-131 473.4 457 60.4
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.8e-131 473.0 481 59.3
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.4e-130 470.7 475 58.1
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.8e-130 470.3 457 60.2
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 2.4e-130 469.9 463 59.8
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.4e-130 469.9 498 57.4
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 5.3e-130 468.8 544 55.1
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 3.5e-129 466.1 435 61.4
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.0e-128 464.5 467 58.9
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 2.2e-128 463.4 489 56.9
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 6.5e-128 461.8 398 64.6
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 8.5e-128 461.5 552 53.8
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.1e-127 461.1 457 59.3
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.5e-127 459.9 511 54.8
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 3.2e-127 459.5 536 54.1
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 4.2e-127 459.1 385 66.0
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 5.5e-127 458.8 480 59.4
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 2.7e-126 456.4 529 53.3
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 2.7e-126 456.4 528 54.2
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.0e-125 454.5 364 69.0
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.3e-125 453.4 448 59.8
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 5.2e-125 452.2 539 52.9
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 5.2e-125 452.2 516 54.8
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.8e-125 451.4 492 55.9
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 8.8e-125 451.4 546 52.0
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-124 451.1 470 58.5
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 2.0e-124 450.3 472 57.8
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 3.3e-124 449.5 454 59.3
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 3.3e-124 449.5 454 59.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.3e-123 447.6 449 59.2
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.7e-123 447.2 551 51.7
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 2.8e-123 446.4 449 59.2
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 8.2e-123 444.9 470 57.4
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.1e-122 442.6 446 58.1
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.3e-122 442.2 478 56.3
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 7.0e-122 441.8 556 51.4
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 9.1e-122 441.4 518 53.1
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.0e-121 440.3 435 59.5
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 4.5e-121 439.1 543 51.9
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.9e-121 438.7 476 55.5
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.2e-119 433.0 475 56.2
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.2e-119 431.8 468 57.3
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.4e-116 422.5 537 51.2
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.4e-116 422.5 485 55.3
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.7e-115 419.5 474 53.6
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 8.3e-115 418.3 487 53.2
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 4.1e-114 416.0 525 51.4
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 4.1e-114 416.0 333 65.8
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.2e-113 414.5 514 52.5
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 2.0e-113 413.7 587 48.6
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.5e-113 412.5 420 57.9
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.0e-109 399.8 502 52.4
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.2e-108 397.9 472 52.3
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.6e-108 396.7 458 52.8
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.7e-107 394.0 425 54.8
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 1.1e-106 391.3 433 55.4
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.8e-106 390.6 493 51.3
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 4.5e-105 386.0 491 50.5
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 1.5e-103 380.9 539 48.1
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 5.2e-101 372.5 466 50.0
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 3.7e-99 366.3 491 45.6
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.1e-98 364.8 606 42.6
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.0e-97 360.5 532 47.9
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 4.6e-97 359.4 406 55.4
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 6.0e-97 359.0 414 52.2
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.0e-96 355.9 465 51.4
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 2.5e-95 353.6 456 48.9
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 5.2e-93 345.9 387 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 6.4e-91 339.0 422 46.7
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 3.3e-87 326.6 287 62.0
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 5.8e-84 315.8 320 57.8
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.4e-82 310.5 333 58.6
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 9.5e-79 298.5 265 65.3
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.0e-77 293.1 412 49.5
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.6e-73 281.2 444 40.5
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 3.0e-72 276.9 365 41.9
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.3e-67 261.5 453 37.1
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.4e-66 257.3 254 62.2
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.8e-51 206.8 152 68.4
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 4.9e-51 206.5 131 80.2
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-46 191.8 141 67.4
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.2e-46 189.5 141 66.7
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.8e-45 188.0 141 66.0
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.4e-44 183.7 181 58.0
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-40 171.8 168 56.0
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-39 168.7 134 62.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-39 168.3 134 61.9
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 3.1e-37 160.6 449 29.4
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.9e-34 151.4 95 82.1
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-33 147.9 128 60.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.1e-33 146.4 171 49.7
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.5e-27 125.9 73 79.5
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.9e-26 124.8 72 79.2
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.1e-23 115.5 93 67.7
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.8e-21 108.2 337 27.3
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 9.4e-18 95.9 81 65.4
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.2e-16 90.1 71 73.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.3e-15 87.4 52 86.5
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 3.1e-13 80.9 53 69.8
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.2e-12 79.0 135 41.5
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 2.7e-09 67.8 57 64.9
Dinv08405 Davidia involucrata HOM05D004623 ORTHO05D005100 4.7e-09 67.0 116 45.7
VMungo1383G2282 Vigna mungo HOM05D004623 ORTHO05D005100 7.5e-07 59.7 93 43.0
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.8e-06 57.8 136 34.6


User provided reference genes

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