Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 5.8e-138 494.2 247 100.0
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 6.9e-115 417.5 250 84.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.1e-101 373.6 245 75.5
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-101 373.2 245 75.1
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.4e-99 366.7 246 72.4
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.4e-99 366.7 247 72.5
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 7.0e-99 364.4 232 76.7
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.0e-94 350.5 247 71.7
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 6.3e-92 341.3 233 72.1
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.4e-91 339.3 247 67.6
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 7.2e-88 327.8 240 67.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 9.4e-88 327.4 227 72.7
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.6e-87 326.6 239 68.2
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 1.8e-86 323.2 245 65.3
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.8e-86 321.2 239 65.7
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 2.0e-85 319.7 237 68.4
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 2.0e-85 319.7 247 66.8
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.4e-85 318.9 257 62.6
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 3.4e-85 318.9 247 63.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.3e-84 317.0 233 67.4
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 2.2e-84 316.2 235 67.7
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 2.8e-84 315.8 247 61.9
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.8e-84 315.8 243 65.4
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.7e-84 315.5 243 65.8
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.7e-84 315.5 232 67.7
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 3.7e-84 315.5 236 64.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.7e-84 315.5 219 71.2
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.7e-84 315.5 234 67.9
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.3e-84 314.7 239 66.1
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 8.3e-84 314.3 247 65.6
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.4e-83 313.5 234 64.5
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 3.1e-83 312.4 235 67.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 3.1e-83 312.4 244 63.9
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 7.0e-83 311.2 234 63.7
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.6e-82 310.1 240 65.8
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.0e-82 309.7 235 67.2
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 4.5e-82 308.5 232 65.5
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 4.5e-82 308.5 232 66.4
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.7e-81 306.6 235 65.1
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 2.3e-81 306.2 233 65.7
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 8.6e-81 304.3 235 64.3
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.6e-81 304.3 235 64.3
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 8.6e-81 304.3 234 65.0
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.1e-80 303.9 234 62.8
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.5e-80 303.5 245 62.4
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.9e-80 303.1 189 76.7
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.9e-80 303.1 249 60.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 7.2e-80 301.2 233 65.7
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 7.2e-80 301.2 251 60.2
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 2.1e-79 299.7 248 62.1
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 3.6e-79 298.9 246 60.6
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 6.1e-79 298.1 234 65.4
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 8.0e-79 297.7 235 60.0
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.0e-78 297.4 219 68.5
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.4e-78 297.0 233 63.1
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 3.0e-78 295.8 233 63.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 3.0e-78 295.8 233 62.2
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.2e-78 295.0 239 64.0
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 5.2e-78 295.0 230 66.5
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 5.2e-78 295.0 247 61.5
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 6.8e-78 294.7 247 61.9
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 6.8e-78 294.7 247 61.9
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 6.8e-78 294.7 192 71.4
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 6.8e-78 294.7 252 59.9
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.5e-77 293.5 233 62.2
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.6e-77 292.7 254 60.2
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.6e-77 292.7 254 60.2
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 4.4e-77 292.0 233 61.8
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 5.7e-77 291.6 233 63.9
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 5.7e-77 291.6 235 62.1
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 7.5e-77 291.2 233 63.5
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 9.8e-77 290.8 235 62.6
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.3e-76 290.4 245 60.0
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.2e-76 289.7 249 61.0
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.9e-76 289.3 245 60.8
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.7e-76 288.9 233 63.1
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 3.7e-76 288.9 225 62.7
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 3.7e-76 288.9 242 62.4
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.9e-76 288.5 233 62.2
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 6.3e-76 288.1 247 61.1
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.1e-75 287.3 235 63.0
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.4e-75 287.0 233 61.4
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 9.2e-75 284.3 234 62.0
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-74 283.5 239 61.5
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-74 283.5 255 58.4
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 2.7e-74 282.7 226 64.6
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 3.5e-74 282.3 178 74.7
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.6e-74 282.0 273 56.0
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.9e-74 281.6 220 65.0
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.3e-73 280.4 255 57.6
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 3.9e-73 278.9 241 59.8
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-72 276.9 176 74.4
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.9e-72 276.6 175 75.4
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 4.3e-72 275.4 225 61.3
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 5.6e-72 275.0 240 60.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 5.6e-72 275.0 240 60.4
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 2.8e-71 272.7 180 70.6
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 3.6e-71 272.3 267 55.4
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.7e-71 271.9 233 60.9
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 8.0e-71 271.2 235 61.3
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.0e-70 270.8 270 54.1
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.3e-70 269.6 190 69.5
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 4.0e-70 268.9 267 53.9
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 6.8e-70 268.1 246 60.2
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 2.0e-69 266.5 178 71.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.0e-69 266.5 182 68.7
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 3.4e-69 265.8 175 72.6
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.4e-69 265.8 175 72.0
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.4e-69 265.8 332 46.1
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.4e-69 265.4 182 68.7
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 9.8e-69 264.2 233 59.7
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.3e-68 263.8 192 65.6
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.7e-68 263.5 224 60.7
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 2.2e-68 263.1 174 71.8
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.4e-67 259.6 183 69.4
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 9.2e-67 257.7 187 66.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.0e-66 256.5 176 69.3
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 3.5e-66 255.8 233 56.2
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.5e-66 255.8 233 53.2
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.0e-65 254.2 184 65.2
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.3e-65 253.8 264 53.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.7e-65 253.4 171 69.6
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 2.3e-65 253.1 233 53.6
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.0e-65 252.7 264 51.9
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.9e-65 252.3 171 70.8
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.5e-64 250.4 186 63.4
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.5e-64 250.4 170 70.0
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.5e-64 250.4 170 70.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.3e-64 249.2 270 49.6
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.6e-63 246.9 164 70.7
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.1e-63 246.5 181 68.5
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 6.8e-62 241.5 243 53.5
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.6e-61 239.6 161 68.9
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 7.5e-61 238.0 233 53.2
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 8.3e-60 234.6 158 65.8
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.1e-59 234.2 175 62.9
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-59 233.8 181 63.0
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 2.1e-58 229.9 233 50.2
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.5e-56 223.8 229 52.8
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.9e-56 223.4 231 52.4
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.9e-53 211.1 128 76.6
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 4.9e-52 208.8 200 55.0
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.1e-51 205.7 134 67.9
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 3.5e-50 202.6 120 72.5
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 7.8e-50 201.4 146 64.4
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 9.6e-48 194.5 226 48.7
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 9.6e-48 194.5 226 48.7
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.6e-47 193.7 168 59.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.2e-44 183.3 125 70.4
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.0e-41 174.5 166 51.8
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.6e-34 150.6 201 42.8
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 2.8e-31 139.8 124 55.6
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 6.5e-20 102.1 108 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.5e-19 100.1 141 42.6
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 2.7e-18 96.7 147 42.2
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 3.9e-17 92.8 59 67.8
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 3.9e-17 92.8 65 66.2
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 7.4e-16 88.6 186 29.6
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.7e-12 77.4 48 62.5
Actinidia04198 Actinidia chinensis HOM05D000749 ORTHO05D005685 4.1e-06 56.2 36 69.4


User provided reference genes

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