Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11330 Vaccinium macrocarpon HOM05D011420 ORTHO05D427076 0.0e+00 1176.0 613 100.0
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.2e-68 263.8 357 53.5
RhsimUnG0229500 Rhododendron simsii HOM05D011420 ORTHO05D023110 5.5e-36 156.8 234 43.2
RhsimUnG0229100 Rhododendron simsii HOM05D011420 ORTHO05D023110 1.9e-33 148.3 221 42.5
Rhsim04G0200300 Rhododendron simsii HOM05D011420 ORTHO05D339257 1.2e-27 129.0 195 42.6
Rhsim09G0098400 Rhododendron simsii HOM05D011420 ORTHO05D023110 2.2e-24 118.2 202 39.1
Rhsim02G0060500 Rhododendron simsii HOM05D011420 ORTHO05D338737 6.3e-24 116.7 205 36.1
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.1e-23 114.4 69 89.9
Rhsim05G0046300 Rhododendron simsii HOM05D011420 ORTHO05D023110 4.5e-22 110.5 168 43.5
RhsimUnG0140800 Rhododendron simsii HOM05D011420 ORTHO05D023110 4.5e-22 110.5 168 43.5
Rhsim08G0226000 Rhododendron simsii HOM05D011420 ORTHO05D338901 1.1e-17 95.9 122 48.4
vmacro16443 Vaccinium macrocarpon HOM05D011420 ORTHO05D019352 6.3e-16 90.1 209 34.0
Rhsim02G0108500 Rhododendron simsii HOM05D036465 ORTHO05D339503 1.8e-15 88.6 115 44.3
vmacro18699 Vaccinium macrocarpon HOM05D011420 ORTHO05D023110 1.8e-15 88.6 162 37.7
Rhsim02G0107300 Rhododendron simsii HOM05D036465 ORTHO05D340015 3.1e-15 87.8 115 47.0
Rhsim04G0200600 Rhododendron simsii HOM05D007604 ORTHO05D008966 1.2e-14 85.9 159 36.5
Rhsim06G0023600 Rhododendron simsii HOM05D011420 ORTHO05D019352 5.5e-12 77.0 155 36.1
vmacro19721 Vaccinium macrocarpon HOM05D036465 ORTHO05D426857 2.1e-11 75.1 230 31.7
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 2.6e-09 68.2 179 33.0
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 5.7e-09 67.0 178 32.6
Actinidia05683 Actinidia chinensis HOM05D005214 ORTHO05D005861 7.5e-09 66.6 178 33.1
Rhsim07G0186700 Rhododendron simsii HOM05D005214 ORTHO05D005861 7.5e-09 66.6 180 33.3
FAN02G3954 Fragaria x ananassa HOM05D005214 ORTHO05D005861 9.7e-09 66.2 181 32.0
Oeu040762.1 Olea europaea HOM05D005214 ORTHO05D005861 9.7e-09 66.2 178 32.6
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 1.3e-08 65.9 181 32.6
CARHR186180 Cardamine hirsuta HOM05D005214 ORTHO05D005861 1.7e-08 65.5 178 33.1
FvH4_6g06420 Fragaria vesca HOM05D005214 ORTHO05D005861 1.7e-08 65.5 181 32.0
MD12G1215600 Malus domestica HOM05D005214 ORTHO05D005861 2.2e-08 65.1 167 32.9
QL03p011667 Quercus lobata HOM05D005214 ORTHO05D005861 2.2e-08 65.1 178 31.5
QL03p021693 Quercus lobata HOM05D005214 ORTHO05D005861 2.2e-08 65.1 178 31.5
ATR0743G060 Amborella trichopoda HOM05D005214 ORTHO05D005861 3.7e-08 64.3 181 32.6
AUR62000783 Chenopodium quinoa HOM05D005214 ORTHO05D005861 3.7e-08 64.3 179 31.3
FAN17G2752 Fragaria x ananassa HOM05D005214 ORTHO05D005861 4.8e-08 63.9 180 32.2
Manes.08G119000 Manihot esculenta HOM05D005214 ORTHO05D005861 4.8e-08 63.9 178 32.0
Dinv40313 Davidia involucrata HOM05D005214 ORTHO05D005861 6.3e-08 63.5 178 32.0
Thecc.05G311500 Theobroma cacao HOM05D005214 ORTHO05D005861 6.3e-08 63.5 178 30.9
GSVIVG01031122001 Vitis vinifera HOM05D005214 ORTHO05D005861 6.3e-08 63.5 178 31.5
Eucgr.H04504 Eucalyptus grandis HOM05D005214 ORTHO05D005861 8.2e-08 63.2 178 31.5
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 8.2e-08 63.2 178 32.0
Cc00_g10460 Coffea canephora HOM05D005214 ORTHO05D005861 1.1e-07 62.8 178 30.9
AT5G27660 Arabidopsis thaliana HOM05D005214 ORTHO05D005861 1.4e-07 62.4 178 32.0
CSS0000343 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 1.4e-07 62.4 178 32.6
FAN05G5708 Fragaria x ananassa HOM05D005214 ORTHO05D005861 1.4e-07 62.4 181 31.5
Hma1.2p1_1212F.1_g267370 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 1.4e-07 62.4 180 31.7
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 1.8e-07 62.0 177 32.8
A06p37390 Brassica napus HOM05D005214 ORTHO05D005861 1.8e-07 62.0 177 32.8
C07p40960 Brassica napus HOM05D005214 ORTHO05D005861 1.8e-07 62.0 177 32.8
BolC7t44627H Brassica oleracea HOM05D005214 ORTHO05D005861 1.8e-07 62.0 177 32.8
BraA06t26663Z Brassica rapa HOM05D005214 ORTHO05D005861 1.8e-07 62.0 177 32.8
AL6G39370 Arabidopsis lyrata HOM05D005214 ORTHO05D005861 2.4e-07 61.6 178 32.0
Carub.0006s2493 Capsella rubella HOM05D005214 ORTHO05D005861 2.4e-07 61.6 178 32.0
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 2.4e-07 61.6 182 31.3
Lj1g0009363 Lotus japonicus HOM05D005214 ORTHO05D005861 3.1e-07 61.2 182 30.2
Cfa006617 Carpinus fangiana HOM05D005214 ORTHO05D005861 4.1e-07 60.8 178 31.5
Migut.N01980 Erythranthe guttata HOM05D005214 ORTHO05D005861 4.1e-07 60.8 179 30.7
Migut.N02017 Erythranthe guttata HOM05D005214 ORTHO05D005861 4.1e-07 60.8 179 30.7
FvH4_7g05300 Fragaria vesca HOM05D005214 ORTHO05D005861 5.3e-07 60.5 173 32.4
Sp2g20820 Schrenkiella parvula HOM05D005214 ORTHO05D005861 5.3e-07 60.5 178 31.5
Sc06g0004100 Simmondsia chinensis HOM05D005214 ORTHO05D005861 5.3e-07 60.5 104 37.5
THA.LOC104802800 Tarenaya hassleriana HOM05D005214 ORTHO05D005861 5.3e-07 60.5 178 30.3
BcaNung04541 Brassica carinata HOM05D005214 ORTHO05D005861 9.1e-07 59.7 177 32.2
TWI12G0439 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 9.1e-07 59.7 182 29.7
Thhalv10004245m.g Eutrema salsugineum HOM05D005214 ORTHO05D005861 1.2e-06 59.3 178 32.0
Haze_04156 Corylus avellana HOM05D005214 ORTHO05D007291 1.6e-06 58.9 178 30.9
Nitab4.5_0002144g0030 Nicotiana tabacum HOM05D005214 ORTHO05D005861 2.7e-06 58.2 178 31.5
Medtr7g113170 Medicago truncatula HOM05D005214 ORTHO05D005861 3.5e-06 57.8 177 29.4
MD04G1201900 Malus domestica HOM05D005214 ORTHO05D005861 7.7e-06 56.6 167 31.7


User provided reference genes

Program Settings