Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11329 Vaccinium macrocarpon HOM05D010265 ORTHO05D051532 4.5e-161 571.2 298 100.0
vmacro07516 Vaccinium macrocarpon HOM05D010265 ORTHO05D051532 2.3e-112 409.5 354 68.1
Rhsim12G0190700 Rhododendron simsii HOM05D000367 ORTHO05D001438 4.4e-15 86.3 43 97.7
vmacro16889 Vaccinium macrocarpon HOM05D000367 ORTHO05D001438 3.7e-14 83.2 43 95.3
Lj5A74G67 Lonicera japonica HOM05D000367 ORTHO05D001438 1.9e-13 80.9 43 90.7
Sc12g0008740 Simmondsia chinensis HOM05D000367 ORTHO05D001438 3.2e-13 80.1 43 86.0
GSVIVG01017355001 Vitis vinifera HOM05D000367 ORTHO05D001438 3.2e-13 80.1 43 88.4
CiPaw.01G249000 Carya illinoinensis HOM05D000367 ORTHO05D001438 4.1e-13 79.7 43 90.7
Nitab4.5_0003463g0030 Nicotiana tabacum HOM05D000367 ORTHO05D001438 5.4e-13 79.3 42 85.7
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.4e-13 79.3 194 34.0
Hma1.2p1_0242F.1_g100660 Hydrangea macrophylla HOM05D000367 ORTHO05D001438 7.1e-13 79.0 43 88.4
Actinidia15977 Actinidia chinensis HOM05D000367 ORTHO05D001438 9.2e-13 78.6 43 83.7
Rhsim09G0050400 Rhododendron simsii HOM05D017214 ORTHO05D018100 9.2e-13 78.6 187 34.8
Sed0006472 Sechium edule HOM05D000367 ORTHO05D001438 9.2e-13 78.6 75 58.7
Dinv38128 Davidia involucrata HOM05D000367 ORTHO05D001438 1.2e-12 78.2 43 86.0
Eucgr.J03072 Eucalyptus grandis HOM05D000367 ORTHO05D001438 1.2e-12 78.2 43 88.4
Nitab4.5_0008560g0040 Nicotiana tabacum HOM05D000367 ORTHO05D001438 1.2e-12 78.2 42 85.7
RhsimUnG0085900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-12 78.2 183 33.3
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-12 77.8 195 35.4
HanXRQChr10g0302831 Helianthus annuus HOM05D000367 ORTHO05D001438 2.1e-12 77.4 39 89.7
Cc04_g04480 Coffea canephora HOM05D000367 ORTHO05D001438 2.7e-12 77.0 39 92.3
Dinv30615 Davidia involucrata HOM05D000367 ORTHO05D001438 2.7e-12 77.0 43 88.4
Peaxi162Scf00332g00632 Petunia axillaris HOM05D000367 ORTHO05D001438 2.7e-12 77.0 42 83.3
Solyc03g116790.4 Solanum lycopersicum HOM05D000367 ORTHO05D001438 2.7e-12 77.0 42 83.3
Sopen03g035710 Solanum pennellii HOM05D000367 ORTHO05D001438 2.7e-12 77.0 42 83.3
Aa31LG4G310 Aethionema arabicum HOM05D000030 ORTHO05D001438 3.5e-12 76.6 43 83.7
Cfa001954 Carpinus fangiana HOM05D000367 ORTHO05D001438 3.5e-12 76.6 43 88.4
Haze_16570 Corylus avellana HOM05D000367 ORTHO05D001438 3.5e-12 76.6 43 88.4
Oeu018808.1 Olea europaea HOM05D000367 ORTHO05D001438 3.5e-12 76.6 43 83.7
Cpa.g.sc67.41 Carica papaya HOM05D000367 ORTHO05D001438 6.0e-12 75.9 43 83.7
Sed0010779 Sechium edule HOM05D000367 ORTHO05D001438 6.0e-12 75.9 43 83.7
TAR625G0785 Trochodendron aralioides HOM05D000367 ORTHO05D001438 6.0e-12 75.9 43 81.4
MELO3C017839.2 Cucumis melo HOM05D000367 ORTHO05D001438 7.8e-12 75.5 43 81.4
CsaV3_4G001970 Cucumis sativus L. HOM05D000367 ORTHO05D001438 7.8e-12 75.5 43 81.4
DCAR_025519 Daucus carota HOM05D000367 ORTHO05D001438 7.8e-12 75.5 39 92.3
Gohir.A06G113200 Gossypium hirsutum HOM05D000367 ORTHO05D001438 7.8e-12 75.5 43 81.4
Gorai.010G140900 Gossypium raimondii HOM05D000367 ORTHO05D001438 7.8e-12 75.5 43 81.4
Rhsim08G0017800 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.8e-12 75.5 223 28.7
AUR62016329 Chenopodium quinoa HOM05D000367 ORTHO05D001438 1.0e-11 75.1 43 79.1
ClCG07G012190 Citrullus lanatus HOM05D000367 ORTHO05D001438 1.0e-11 75.1 43 79.1
ECA234G2864 Erigeron canadensis HOM05D000367 ORTHO05D001438 1.0e-11 75.1 39 89.7
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.0e-11 75.1 194 30.4
Hund06553 Selenicereus undatus HOM05D000367 ORTHO05D001438 1.0e-11 75.1 43 79.1
MSTRG.9421 Avicennia marina HOM05D000367 ORTHO05D001438 1.3e-11 74.7 43 81.4
COL.COLO4_11930 Corchorus olitorius HOM05D000367 ORTHO05D001438 1.3e-11 74.7 43 83.7
HanXRQChr12g0361561 Helianthus annuus HOM05D000367 ORTHO05D001438 1.3e-11 74.7 43 81.4
Nn8g39531 Nelumbo nucifera HOM05D001442 ORTHO05D001438 1.3e-11 74.7 43 83.7
unitig_60.g25609 Utricularia gibba HOM05D000367 ORTHO05D001438 1.3e-11 74.7 43 79.1
FAN05G0721 Fragaria x ananassa HOM05D000367 ORTHO05D001438 1.7e-11 74.3 43 86.0
Lsat_1_v5_gn_5_131441 Lactuca sativa HOM05D000367 ORTHO05D001438 1.7e-11 74.3 39 87.2
MD17G1213500 Malus domestica HOM05D000367 ORTHO05D001438 1.7e-11 74.3 43 83.7
PGR031G2348 Punica granatum HOM05D000367 ORTHO05D001438 1.7e-11 74.3 39 89.7
QL05p030721 Quercus lobata HOM05D000367 ORTHO05D001438 1.7e-11 74.3 43 86.0
Rhsim02G0102300 Rhododendron simsii HOM05D000030 ORTHO05D000031 1.7e-11 74.3 189 32.3
Sp5g35800 Schrenkiella parvula HOM05D000367 ORTHO05D001438 1.7e-11 74.3 43 81.4
THA.LOC104800440 Tarenaya hassleriana HOM05D000367 ORTHO05D001438 1.7e-11 74.3 43 81.4
TWI75G0679 Tripterygium wilfordii HOM05D000367 ORTHO05D001438 1.7e-11 74.3 42 81.0
Actinidia08793 Actinidia chinensis HOM05D000367 ORTHO05D001438 2.3e-11 73.9 43 74.4
CAN.G407.75 Capsicum annuum HOM05D000367 ORTHO05D001438 2.3e-11 73.9 42 78.6
AUR62011510 Chenopodium quinoa HOM05D000367 ORTHO05D001438 2.3e-11 73.9 43 76.7
AL2G41510 Arabidopsis lyrata HOM05D000367 ORTHO05D001438 3.0e-11 73.6 43 81.4
EL10Ac9g21879 Beta vulgaris HOM05D000367 ORTHO05D001438 3.0e-11 73.6 43 79.1
BcaC08g47566 Brassica carinata HOM05D000367 ORTHO05D001438 3.0e-11 73.6 43 81.4
CARHR074450 Cardamine hirsuta HOM05D000367 ORTHO05D001438 3.0e-11 73.6 43 81.4
Ciclev10025441m.g Citrus clementina HOM05D000367 ORTHO05D001438 3.0e-11 73.6 43 79.1
Gohir.D06G120600 Gossypium hirsutum HOM05D000367 ORTHO05D001438 3.0e-11 73.6 43 79.1
Thhalv10018440m.g Eutrema salsugineum HOM05D000367 ORTHO05D001438 3.9e-11 73.2 43 79.1
MBI15_g41550_MAGBIO Magnolia biondii HOM05D000367 ORTHO05D001438 3.9e-11 73.2 43 81.4
arahy.Tifrunner.gnm1.ann1.HU2JKE Arachis hypogaea HOM05D000367 ORTHO05D001438 5.1e-11 72.8 43 79.1
arahy.Tifrunner.gnm1.ann1.L74AP1 Arachis hypogaea HOM05D000367 ORTHO05D001438 5.1e-11 72.8 43 79.1
Carub.0002s2749 Capsella rubella HOM05D000367 ORTHO05D001438 5.1e-11 72.8 43 79.1
FvH4_6g52160 Fragaria vesca HOM05D000367 ORTHO05D001438 5.1e-11 72.8 43 83.7
RcHm_v2.0_Chr2g0135071 Rosa chinensis HOM05D000367 ORTHO05D001438 5.1e-11 72.8 43 83.7
SGA_v2.0_scaffold26G11345 Striga asiatica HOM05D000367 ORTHO05D001438 5.1e-11 72.8 39 84.6
Thecc.06G029100 Theobroma cacao HOM05D000367 ORTHO05D001438 5.1e-11 72.8 43 81.4
AT1G80030 Arabidopsis thaliana HOM05D000367 ORTHO05D001438 6.6e-11 72.4 43 79.1
A07p45450 Brassica napus HOM05D000367 ORTHO05D001438 6.6e-11 72.4 43 79.1
BraA07t32049Z Brassica rapa HOM05D000367 ORTHO05D001438 6.6e-11 72.4 43 79.1
CANSAT56G1125 Cannabis sativa HOM05D000367 ORTHO05D001438 6.6e-11 72.4 49 75.5
FAN02G2757 Fragaria x ananassa HOM05D000367 ORTHO05D001438 6.6e-11 72.4 43 83.7
FAN09G1569 Fragaria x ananassa HOM05D000367 ORTHO05D001438 6.6e-11 72.4 43 83.7
Prupe.3G088900 Prunus persica HOM05D000367 ORTHO05D001438 6.6e-11 72.4 43 83.7
Atru.chr1.2905 Acer truncatum HOM05D000367 ORTHO05D001438 8.6e-11 72.0 43 83.7
Lalb_Chr24g0395461 Lupinus albus HOM05D000367 ORTHO05D001438 8.6e-11 72.0 49 71.4
HPP92_017056 Vanilla planifolia HOM05D000367 ORTHO05D001438 8.6e-11 72.0 49 73.5
Ca_01052_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001438 1.1e-10 71.6 43 76.7
PSO017G4937 Papaver somniferum HOM05D000367 ORTHO05D001438 1.1e-10 71.6 43 76.7
PSO170G0494 Papaver somniferum HOM05D000367 ORTHO05D001438 1.1e-10 71.6 43 76.7
RhsimUnG0151500 Rhododendron simsii HOM05D017214 ORTHO05D018100 1.1e-10 71.6 179 35.2
Manes.11G058000 Manihot esculenta HOM05D000367 ORTHO05D001438 1.5e-10 71.2 43 79.1
Rhsim01G0048500 Rhododendron simsii HOM05D010265 ORTHO05D009356 1.5e-10 71.2 235 32.8
Rhsim06G0241200 Rhododendron simsii HOM05D010265 ORTHO05D009356 1.5e-10 71.2 191 34.0
TWI18G1067 Tripterygium wilfordii HOM05D000367 ORTHO05D001438 1.5e-10 71.2 41 82.9
Aqoxy7G01860 Aquilegia oxysepala HOM05D000367 ORTHO05D001438 1.9e-10 70.9 39 87.2
C06p54280 Brassica napus HOM05D000367 ORTHO05D001438 1.9e-10 70.9 43 76.7
BolC6t40441H Brassica oleracea HOM05D000367 ORTHO05D001438 1.9e-10 70.9 43 76.7
VMungo1080G1849 Vigna mungo HOM05D000367 ORTHO05D001438 1.9e-10 70.9 43 79.1
Duzib235G0501 Durio zibethinus HOM05D000367 ORTHO05D001438 2.5e-10 70.5 43 76.7
Lj3g0006241 Lotus japonicus HOM05D000367 ORTHO05D001438 2.5e-10 70.5 39 84.6
FvH4_6g29530 Fragaria vesca HOM05D000367 ORTHO05D001438 3.3e-10 70.1 43 81.4
Rhsim13G0191800 Rhododendron simsii HOM05D010265 ORTHO05D009356 4.3e-10 69.7 231 32.5
Migut.D01083 Erythranthe guttata HOM05D000367 ORTHO05D001438 5.6e-10 69.3 38 81.6
Rhsim01G0138200 Rhododendron simsii HOM05D010265 ORTHO05D009356 5.6e-10 69.3 231 32.0
Glyma.15G006900 Glycine max HOM05D000367 ORTHO05D001438 7.3e-10 68.9 43 76.7
Psat5g303520 Pisum sativum HOM05D000367 ORTHO05D001438 7.3e-10 68.9 43 76.7
vmacro02192 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 9.5e-10 68.6 178 30.9
Phvul.005G178800 Phaseolus vulgaris HOM05D000367 ORTHO05D001438 1.2e-09 68.2 43 74.4
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-09 68.2 177 28.2
Rhsim11G0186100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-09 68.2 177 28.2
SMO351G0144 Selaginella moellendorffii HOM05D000367 ORTHO05D001438 1.2e-09 68.2 43 67.4
Sabra03G0018100 Salix brachista HOM05D000367 ORTHO05D001438 1.6e-09 67.8 43 76.7
TPR.G37168 Trifolium pratense HOM05D000367 ORTHO05D001438 2.8e-09 67.0 43 76.7
FAN14G4190 Fragaria x ananassa HOM05D000367 ORTHO05D001438 3.6e-09 66.6 39 82.1
FAN14G5097 Fragaria x ananassa HOM05D000367 ORTHO05D001438 3.6e-09 66.6 39 82.1
Potri.003G031800 Populus trichocarpa HOM05D000367 ORTHO05D001438 3.6e-09 66.6 43 76.7
Rhsim11G0108900 Rhododendron simsii HOM05D017214 ORTHO05D018100 3.6e-09 66.6 113 38.9
Zm00001eb258200 Zea mays HOM05D000367 ORTHO05D001438 3.6e-09 66.6 43 74.4
Medtr2g104030 Medicago truncatula HOM05D000367 ORTHO05D001438 4.7e-09 66.2 43 72.1
CDE01G0238 Ceratophyllum demersum HOM05D000367 ORTHO05D001438 6.2e-09 65.9 42 69.0
Zm00001eb192080 Zea mays HOM05D000367 ORTHO05D001438 8.1e-09 65.5 45 71.1
vmacro11531 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 1.4e-08 64.7 178 30.3
ATR1134G116 Amborella trichopoda HOM05D000367 ORTHO05D001438 1.8e-08 64.3 43 65.1
Os02g0804500 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D001438 2.3e-08 63.9 39 74.4
Rhsim05G0113800 Rhododendron simsii HOM05D010265 ORTHO05D009356 2.3e-08 63.9 179 32.4
Rhsim05G0007500 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.1e-08 63.5 179 30.2
RhsimUnG0075300 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.1e-08 63.5 109 39.4
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.1e-08 63.5 196 27.6
Pp3c22_21460 Physcomitrium patens HOM05D000367 ORTHO05D001438 4.0e-08 63.2 49 61.2
RhsimUnG0052900 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.0e-08 63.2 179 30.2
Rhsim13G0074200 Rhododendron simsii HOM05D010265 ORTHO05D009356 5.2e-08 62.8 106 40.6
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.9e-08 62.0 179 30.2
Rhsim07G0051900 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.9e-08 62.0 171 31.6
RhsimUnG0176300 Rhododendron simsii HOM05D000026 ORTHO05D000127 8.9e-08 62.0 182 29.7
Mapoly0030s0106 Marchantia polymorpha HOM05D000367 ORTHO05D001438 1.2e-07 61.6 43 60.5
PRCOL_00001987 Prasinoderma coloniale HOM05D000367 ORTHO05D001438 1.2e-07 61.6 49 57.1
Rhsim04G0035700 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-07 61.6 188 31.4
RhsimUnG0177800 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-07 61.6 188 31.4
Rhsim08G0205100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-07 61.2 126 36.5
SEGI_23212 Sequoiadendron giganteum HOM05D000367 ORTHO05D001438 1.5e-07 61.2 43 69.8
Nitab4.5_0001093g0100 Nicotiana tabacum HOM05D000367 ORTHO05D001438 2.0e-07 60.8 51 52.9
AagrBONN_evm.TU.Sc2ySwM_117.827 Anthoceros agrestis HOM05D000367 ORTHO05D001438 3.4e-07 60.1 49 49.0
Pp3c18_2150 Physcomitrium patens HOM05D000367 ORTHO05D001438 3.4e-07 60.1 46 60.9
AUR62010151 Chenopodium quinoa HOM05D000367 ORTHO05D001438 4.4e-07 59.7 48 60.4
Os05g0333500 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D001438 7.6e-07 58.9 49 53.1
Os05g0334000 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D001438 7.6e-07 58.9 49 53.1
Os05g0334400 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D001438 7.6e-07 58.9 49 53.1
Rhsim01G0085700 Rhododendron simsii HOM05D010265 ORTHO05D009356 7.6e-07 58.9 115 39.1
Zm00001eb172900 Zea mays HOM05D000367 ORTHO05D001438 7.6e-07 58.9 49 53.1
Zm00001eb416450 Zea mays HOM05D000367 ORTHO05D001438 7.6e-07 58.9 49 53.1
AagrBONN_evm.TU.Sc2ySwM_228.263 Anthoceros agrestis HOM05D000367 ORTHO05D001438 9.9e-07 58.5 43 62.8
Mapoly0020s0120 Marchantia polymorpha HOM05D000367 ORTHO05D001438 1.3e-06 58.2 49 51.0
Rhsim09G0039900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.3e-06 58.2 231 29.9
CBR_g23776 Chara braunii HOM05D000367 ORTHO05D001438 1.7e-06 57.8 43 60.5
CDE10G0088 Ceratophyllum demersum HOM05D000367 ORTHO05D001438 2.2e-06 57.4 49 51.0
SEGI_22084 Sequoiadendron giganteum HOM05D000367 ORTHO05D001438 2.2e-06 57.4 49 51.0
AUR62013147 Chenopodium quinoa HOM05D000367 ORTHO05D001438 2.9e-06 57.0 48 56.2
Cre12.g507650 Chlamydomonas reinhardtii HOM05D000367 ORTHO05D001438 2.9e-06 57.0 49 53.1
Pp3c7_3290 Physcomitrium patens HOM05D000367 ORTHO05D001438 2.9e-06 57.0 49 53.1
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.9e-06 57.0 153 31.4
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.9e-06 57.0 186 28.5
HanXRQChr11g0338041 Helianthus annuus HOM05D000367 ORTHO05D001438 3.8e-06 56.6 49 57.1
Pp3c5_20400 Physcomitrium patens HOM05D000367 ORTHO05D001438 3.8e-06 56.6 49 51.0
ECA236G3962 Erigeron canadensis HOM05D000367 ORTHO05D001438 4.9e-06 56.2 49 55.1
RhsimUnG0000500 Rhododendron simsii HOM05D010265 ORTHO05D009356 4.9e-06 56.2 208 32.2
RhsimUnG0053300 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.9e-06 56.2 116 31.9
SMO137G0354 Selaginella moellendorffii HOM05D000367 ORTHO05D001438 4.9e-06 56.2 42 57.1
HPP92_023181 Vanilla planifolia HOM05D000367 ORTHO05D001438 4.9e-06 56.2 49 49.0
Rhsim08G0243500 Rhododendron simsii HOM05D010265 ORTHO05D009356 6.4e-06 55.8 187 32.1
Migut.C01165 Erythranthe guttata HOM05D000367 ORTHO05D001438 8.4e-06 55.5 49 53.1
HanXRQChr10g0291721 Helianthus annuus HOM05D000367 ORTHO05D001438 8.4e-06 55.5 49 53.1
Lj2g0028108 Lotus japonicus HOM05D000367 ORTHO05D001438 8.4e-06 55.5 49 51.0
SMO192G0002 Selaginella moellendorffii HOM05D000367 ORTHO05D001438 8.4e-06 55.5 49 49.0
SMO347G0567 Selaginella moellendorffii HOM05D000367 ORTHO05D001438 8.4e-06 55.5 49 49.0


User provided reference genes

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