Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.2e-161 573.2 294 100.0
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.2e-81 307.4 248 69.4
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-80 304.3 286 60.8
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.6e-80 301.6 296 59.8
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.6e-80 301.6 296 59.8
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 5.6e-79 298.5 293 58.7
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.1e-78 296.6 294 57.8
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.6e-78 295.8 294 56.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.5e-76 290.4 296 56.8
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.5e-76 290.4 295 56.6
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 4.4e-76 288.9 296 56.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 4.4e-76 288.9 290 56.6
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 9.9e-76 287.7 291 56.4
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.3e-75 287.3 293 56.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 3.8e-75 285.8 296 55.7
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 3.8e-75 285.8 296 53.7
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 4.9e-75 285.4 293 54.9
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.9e-74 283.5 291 55.7
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.4e-74 283.1 293 57.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.2e-74 282.7 287 55.4
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.1e-74 282.3 296 55.1
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.4e-74 282.0 290 54.1
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 5.4e-74 282.0 289 55.7
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 9.2e-74 281.2 289 56.7
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 9.2e-74 281.2 286 54.9
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.2e-73 280.8 285 55.8
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.2e-73 280.8 282 56.0
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.1e-73 280.0 289 56.4
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.1e-73 280.0 280 56.4
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.7e-73 279.6 295 55.9
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 3.5e-73 279.3 287 55.1
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 3.5e-73 279.3 295 54.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 4.6e-73 278.9 290 54.1
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.6e-73 278.9 295 54.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.0e-73 278.5 295 54.2
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 7.8e-73 278.1 275 57.1
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 7.8e-73 278.1 280 56.1
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 7.8e-73 278.1 290 54.5
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.0e-72 276.2 280 55.7
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 3.9e-72 275.8 290 53.4
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.9e-72 275.8 295 53.6
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.1e-72 275.4 292 54.1
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 8.6e-72 274.6 283 54.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 8.6e-72 274.6 264 57.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.1e-71 274.2 290 54.1
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.5e-71 273.9 298 55.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.9e-71 273.5 287 56.1
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.5e-71 273.1 298 55.7
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.5e-71 273.1 295 51.2
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 4.3e-71 272.3 293 54.3
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.3e-71 272.3 297 53.2
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 5.6e-71 271.9 295 53.2
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 9.6e-71 271.2 288 54.2
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.2e-70 270.8 287 54.0
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.1e-70 270.0 285 55.8
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.1e-70 270.0 280 54.3
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.1e-70 270.0 292 53.8
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 3.6e-70 269.2 290 52.8
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.6e-70 269.2 286 53.8
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.7e-70 268.9 274 54.7
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 6.2e-70 268.5 286 52.8
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.8e-69 266.9 282 53.5
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 4.0e-69 265.8 263 55.5
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 6.9e-69 265.0 295 51.5
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 6.9e-69 265.0 299 52.5
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 8.9e-69 264.6 289 53.3
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.5e-68 263.8 277 54.5
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 9.9e-68 261.2 292 52.1
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.7e-67 260.4 282 52.8
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 4.9e-67 258.8 298 51.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 6.4e-67 258.5 286 51.7
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 6.4e-67 258.5 285 53.7
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.4e-66 256.5 292 51.4
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.4e-66 255.4 292 51.4
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 7.1e-66 255.0 292 51.0
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 7.1e-66 255.0 292 51.7
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.0e-65 251.9 286 50.7
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 7.8e-65 251.5 246 57.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 7.8e-65 251.5 285 51.6
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.0e-64 251.1 289 50.2
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.7e-64 250.4 292 48.6
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.7e-64 250.4 297 50.5
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 5.1e-64 248.8 288 50.7
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 8.7e-64 248.1 287 51.2
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 8.7e-64 248.1 287 49.8
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-63 247.3 289 49.1
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 5.6e-63 245.4 288 47.6
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.3e-62 244.2 290 49.7
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.3e-62 244.2 244 57.0
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 8.1e-62 241.5 277 51.3
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.4e-61 240.7 281 50.5
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 4.0e-61 239.2 289 48.4
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.0e-61 239.2 284 48.9
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.3e-61 238.8 289 47.8
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 9.0e-61 238.0 289 48.1
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 2.6e-60 236.5 289 48.1
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 4.5e-60 235.7 282 49.3
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 4.5e-60 235.7 293 48.8
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 4.5e-60 235.7 279 50.5
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 7.6e-60 235.0 281 48.0
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 9.9e-60 234.6 295 49.2
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-59 233.8 291 47.4
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.7e-59 233.8 291 47.8
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.9e-59 232.3 283 46.6
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.1e-58 231.1 284 47.5
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.4e-58 229.9 295 47.1
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.2e-58 229.6 285 48.1
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.2e-58 229.2 259 51.0
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 5.4e-58 228.8 295 46.8
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.2e-57 227.6 283 49.5
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.6e-57 227.3 294 47.3
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.7e-57 226.5 259 49.8
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.0e-56 224.6 241 53.5
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.8e-56 223.8 282 47.9
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 2.3e-56 223.4 127 85.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 5.1e-56 222.2 283 48.4
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 4.3e-55 219.2 286 47.2
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.8e-54 215.7 281 47.3
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 4.8e-54 215.7 190 61.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.0e-53 212.6 126 81.0
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.3e-53 212.2 292 45.2
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.5e-52 210.7 281 47.0
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.5e-52 210.7 244 51.2
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.8e-51 206.1 249 49.4
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.6e-49 200.7 255 47.1
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 3.9e-48 196.1 120 82.5
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.5e-47 193.4 292 42.5
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 5.3e-45 185.7 110 87.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 6.9e-45 185.3 102 90.2
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.5e-44 184.1 279 40.1
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.4e-42 177.6 104 83.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.3e-42 174.9 239 46.0
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.1e-39 167.9 278 41.4
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 9.6e-39 164.9 279 38.7
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.1e-37 161.4 257 38.9
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.0e-36 157.1 132 60.6
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 4.6e-33 146.0 201 44.3
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.1e-31 141.4 181 45.9
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.4e-29 133.7 260 34.2
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 7.7e-28 128.6 131 51.9
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.9e-26 124.0 246 33.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-25 121.3 68 86.8
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 8.5e-19 98.6 187 37.4
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.2e-17 94.7 66 71.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.3e-15 86.7 99 52.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 3.1e-13 80.1 124 38.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.7e-11 74.3 102 48.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 5.0e-11 72.8 56 67.9
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 6.5e-11 72.4 116 37.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 8.5e-11 72.0 40 87.5
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.1e-10 71.6 62 61.3
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.6e-09 67.8 51 62.7
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 3.0e-08 63.5 157 30.6
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 3.3e-07 60.1 36 83.3
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.3e-06 58.2 163 27.6


User provided reference genes

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