Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 4.0e-304 1047.3 549 100.0
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.8e-256 889.0 544 88.2
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.3e-254 882.9 551 85.3
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 1.9e-253 879.0 549 84.0
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.6e-252 874.4 549 84.0
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 7.9e-252 873.6 550 84.7
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 2.3e-251 872.1 549 84.0
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 3.9e-251 871.3 549 83.2
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.6e-249 865.9 549 84.2
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.6e-249 865.9 549 82.3
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 6.2e-249 864.0 549 82.5
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 1.1e-248 863.2 549 83.1
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 1.4e-248 862.8 549 83.8
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 1.4e-248 862.8 549 83.1
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 1.4e-248 862.8 548 83.0
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.4e-248 862.8 549 83.6
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.8e-248 862.4 549 83.1
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 5.3e-248 860.9 549 82.7
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 6.9e-248 860.5 549 83.2
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 1.2e-247 859.8 549 83.1
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.5e-247 859.4 549 82.1
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 4.5e-247 857.8 549 82.0
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 5.8e-247 857.4 549 81.8
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 1.3e-246 856.3 549 82.0
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.3e-246 856.3 549 81.8
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 1.7e-246 855.9 549 82.0
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 2.9e-246 855.1 549 81.2
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 3.8e-246 854.7 549 81.6
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 4.9e-246 854.4 549 81.1
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 4.9e-246 854.4 549 81.4
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 4.9e-246 854.4 549 82.3
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 1.9e-245 852.4 549 80.9
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.9e-245 852.4 549 82.1
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 2.4e-245 852.0 550 81.5
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 3.2e-245 851.7 549 80.9
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 4.2e-245 851.3 549 81.1
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 4.2e-245 851.3 550 81.6
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 5.5e-245 850.9 549 81.2
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 5.5e-245 850.9 549 80.9
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 9.3e-245 850.1 550 81.5
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 9.3e-245 850.1 550 81.6
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 9.3e-245 850.1 549 80.9
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 9.3e-245 850.1 549 80.7
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.2e-244 849.7 549 81.2
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 2.1e-244 849.0 549 80.7
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 2.7e-244 848.6 550 81.5
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 2.7e-244 848.6 549 81.2
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 6.0e-244 847.4 549 80.9
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.0e-243 846.7 549 81.6
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 1.0e-243 846.7 549 80.1
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 1.0e-243 846.7 550 81.5
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.0e-243 846.7 549 80.1
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 3.0e-243 845.1 549 81.2
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 3.0e-243 845.1 550 81.5
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 3.9e-243 844.7 550 80.4
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 5.1e-243 844.3 549 81.8
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.5e-242 842.8 550 80.7
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 2.5e-242 842.0 549 81.8
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 3.3e-242 841.6 549 79.8
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 4.3e-242 841.3 549 80.9
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 4.3e-242 841.3 549 79.4
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 4.3e-242 841.3 549 80.7
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 7.4e-242 840.5 549 80.5
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 7.4e-242 840.5 549 80.5
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 9.6e-242 840.1 550 80.2
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 9.6e-242 840.1 549 80.0
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.3e-241 839.7 549 79.6
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.6e-241 839.3 549 79.4
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 1.6e-241 839.3 549 79.6
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 1.6e-241 839.3 566 80.4
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 2.1e-241 839.0 549 80.5
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 2.8e-241 838.6 549 79.4
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.8e-240 835.9 549 80.0
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 2.4e-240 835.5 549 80.7
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 3.1e-240 835.1 549 80.9
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 4.0e-240 834.7 549 79.6
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 5.3e-240 834.3 549 79.1
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 5.3e-240 834.3 549 80.9
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 6.9e-240 833.9 549 79.2
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 9.0e-240 833.6 549 79.2
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 9.0e-240 833.6 549 80.9
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.2e-239 833.2 549 79.2
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.5e-239 832.8 549 79.1
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 2.0e-239 832.4 549 79.1
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.6e-239 832.0 549 79.1
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 3.4e-239 831.6 549 78.9
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.3e-238 829.7 550 79.6
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.3e-238 829.7 549 78.7
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 1.7e-238 829.3 550 79.3
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 3.8e-238 828.2 549 79.6
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.4e-237 826.2 549 79.2
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 7.1e-237 823.9 550 79.1
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 7.1e-237 823.9 551 80.2
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 7.1e-237 823.9 533 81.4
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.1e-236 822.4 550 78.9
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 2.1e-236 822.4 549 78.7
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.1e-236 822.4 549 78.7
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.1e-236 822.4 549 78.7
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.0e-236 820.8 549 78.7
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 6.0e-236 820.8 550 78.7
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 7.9e-236 820.5 550 78.4
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 7.9e-236 820.5 549 77.2
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 1.3e-235 819.7 561 77.9
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 2.5e-234 815.5 549 78.3
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 4.8e-233 811.2 551 78.4
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 6.9e-232 807.4 533 81.6
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 1.3e-230 803.1 549 76.7
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.3e-230 803.1 533 79.0
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 1.3e-230 803.1 549 76.7
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 1.7e-230 802.7 549 76.5
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 3.8e-230 801.6 549 76.5
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 3.8e-230 801.6 557 76.8
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 1.9e-229 799.3 533 78.8
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 1.2e-228 796.6 522 78.7
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 6.1e-228 794.3 590 73.2
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 8.8e-227 790.4 533 78.4
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 1.9e-226 789.3 550 75.6
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.5e-226 788.9 524 80.3
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.5e-226 788.9 524 80.3
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 4.8e-225 784.6 511 81.6
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 6.3e-225 784.3 533 78.6
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.8e-224 782.7 549 74.7
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 6.5e-222 774.2 551 75.9
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 4.2e-221 771.5 548 74.8
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.5e-218 763.1 550 73.1
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 2.0e-218 762.7 551 75.1
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 8.2e-217 757.3 549 74.3
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 2.5e-213 745.7 549 73.0
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.0e-206 723.8 479 78.9
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 1.2e-199 700.3 511 75.9
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.7e-196 689.1 549 69.9
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 3.6e-196 688.7 452 81.2
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 6.8e-195 684.5 550 69.6
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 1.0e-190 670.6 542 68.3
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 2.2e-185 652.9 553 61.1
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.7e-182 643.3 544 63.8
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 1.2e-180 637.1 491 69.7
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 7.0e-176 621.3 414 79.2
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 8.6e-174 614.4 364 87.6
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.4e-170 602.4 553 56.8
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 1.1e-168 597.4 364 84.9
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 1.2e-164 583.9 539 57.9
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.8e-163 580.1 347 87.0
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 7.5e-162 574.7 418 73.7
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 6.0e-159 565.1 550 54.7
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.5e-157 559.7 533 55.0
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 7.3e-157 558.1 543 59.5
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 8.1e-156 554.7 325 89.2
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 9.6e-149 531.2 538 50.7
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.8e-147 526.9 496 62.7
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 3.4e-146 522.7 307 89.3
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.3e-140 504.2 284 92.3
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 9.6e-125 451.4 422 56.6
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.0e-118 431.4 293 78.5
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 4.3e-117 426.0 533 47.3
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.5e-113 412.1 245 87.8
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.7e-101 372.5 425 51.1
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 4.5e-98 362.8 525 41.0
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 8.5e-97 358.6 306 67.0
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 2.6e-90 337.0 549 35.3
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 6.3e-84 315.8 199 86.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.3e-65 254.2 382 42.4
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 3.6e-63 246.9 542 35.8
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.4e-59 235.0 142 85.2
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.5e-56 222.2 273 46.9
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.0e-53 214.5 404 38.6
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 3.6e-47 193.7 117 81.2
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.2e-46 189.9 211 52.6
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 5.8e-45 186.4 169 66.3
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.1e-43 180.3 197 52.3
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 3.5e-34 150.6 106 75.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.2e-31 139.8 119 57.1
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 1.1e-27 129.0 82 81.7
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 7.6e-21 106.3 121 57.9
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 7.1e-11 73.2 63 60.3
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 8.7e-09 66.2 37 83.8
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 2.5e-08 64.7 96 47.9


User provided reference genes

Program Settings