Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11112 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 7.0e-84 313.9 160 100.0
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.2e-72 276.6 159 85.5
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 4.7e-72 274.6 159 84.9
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.0e-71 273.5 159 84.9
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 2.0e-70 269.2 159 86.2
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 9.8e-70 266.9 159 83.0
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 1.7e-69 266.2 159 82.4
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 6.2e-64 247.7 159 75.5
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 2.0e-62 242.7 159 74.2
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 3.7e-61 238.4 161 72.0
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 4.9e-61 238.0 159 69.8
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 8.3e-61 237.3 159 72.3
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 1.1e-60 236.9 159 73.6
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 2.4e-60 235.7 158 74.1
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 4.1e-60 235.0 159 73.6
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 7.0e-60 234.2 158 70.9
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 4.6e-59 231.5 159 70.4
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 6.0e-59 231.1 159 71.7
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 6.0e-59 231.1 159 69.8
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 1.0e-58 230.3 159 69.8
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 1.3e-58 229.9 159 71.1
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 1.3e-58 229.9 159 69.8
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 5.1e-58 228.0 159 69.8
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 6.6e-58 227.6 159 69.8
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 6.6e-58 227.6 159 69.8
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 8.6e-58 227.3 159 69.2
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.5e-57 225.7 159 67.9
arahy.Tifrunner.gnm1.ann1.IB6GCN Arachis hypogaea HOM05D001579 ORTHO05D003470 3.3e-57 225.3 159 69.2
Cc02_g25820 Coffea canephora HOM05D001579 ORTHO05D003470 3.3e-57 225.3 159 69.2
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 3.3e-57 225.3 159 69.2
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 5.6e-57 224.6 159 69.2
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 7.3e-57 224.2 159 69.2
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 1.2e-56 223.4 160 70.6
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 1.6e-56 223.0 159 67.9
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 2.8e-56 222.2 159 66.7
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.8e-56 222.2 159 66.7
Ah.12g056180 Amaranthus hybridus HOM05D001579 ORTHO05D003470 6.2e-56 221.1 159 66.0
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 6.2e-56 221.1 159 70.4
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.1e-55 220.3 159 66.0
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 1.4e-55 219.9 159 66.7
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 1.4e-55 219.9 159 66.7
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 1.4e-55 219.9 159 66.7
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 1.4e-55 219.9 159 68.6
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 1.8e-55 219.5 159 67.3
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 2.3e-55 219.2 159 67.9
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 2.3e-55 219.2 160 67.5
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 3.1e-55 218.8 159 66.0
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 4.0e-55 218.4 160 68.8
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 4.0e-55 218.4 156 69.2
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 6.8e-55 217.6 171 64.3
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 6.8e-55 217.6 159 66.0
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 2.6e-54 215.7 159 64.2
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 3.4e-54 215.3 159 66.0
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 7.5e-54 214.2 159 64.2
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 7.5e-54 214.2 160 67.5
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 7.5e-54 214.2 159 64.8
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 7.5e-54 214.2 173 63.0
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 9.9e-54 213.8 160 66.9
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 9.9e-54 213.8 160 66.9
CDE06G0853 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 2.9e-53 212.2 143 72.7
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.9e-53 212.2 159 63.5
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 2.9e-53 212.2 159 64.8
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.7e-53 211.8 159 67.3
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 3.7e-53 211.8 159 64.2
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.4e-52 209.9 160 65.6
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 3.2e-52 208.8 159 62.3
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 3.2e-52 208.8 160 64.4
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 3.2e-52 208.8 160 66.2
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 4.1e-52 208.4 160 65.0
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 5.4e-52 208.0 160 65.0
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 9.2e-52 207.2 158 62.0
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 1.6e-51 206.5 160 65.0
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 1.6e-51 206.5 160 65.0
Lj7A253G28 Lonicera japonica HOM05D001579 ORTHO05D003470 2.1e-51 206.1 200 56.5
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 2.1e-51 206.1 158 62.0
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 3.5e-51 205.3 160 64.4
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.5e-51 205.3 156 66.7
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 3.5e-51 205.3 160 63.1
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 3.5e-51 205.3 160 62.5
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.5e-51 205.3 158 60.1
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 4.6e-51 204.9 160 63.1
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 6.0e-51 204.5 158 61.4
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 7.8e-51 204.1 160 64.4
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 2.3e-50 202.6 160 63.8
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 5.1e-50 201.4 158 59.5
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 5.1e-50 201.4 158 59.5
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 1.1e-49 200.3 158 60.1
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 1.1e-49 200.3 159 63.5
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 1.9e-49 199.5 160 63.8
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 2.5e-49 199.1 160 62.5
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 2.1e-48 196.1 163 60.7
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 2.1e-48 196.1 160 62.5
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 2.1e-48 196.1 160 60.6
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.1e-47 193.7 140 69.3
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 2.4e-47 192.6 160 60.6
Lj7A248G13 Lonicera japonica HOM05D001579 ORTHO05D003470 4.0e-47 191.8 226 49.1
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 2.0e-46 189.5 161 57.8
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 2.9e-45 185.7 160 57.5
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 1.1e-44 183.7 163 56.4
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 1.4e-44 183.3 157 59.2
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 3.2e-44 182.2 159 57.2
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 9.2e-44 180.6 160 57.5
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 4.6e-43 178.3 160 56.2
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 6.0e-43 177.9 160 56.9
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-42 176.4 160 55.6
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 3.0e-42 175.6 160 53.8
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 3.0e-42 175.6 171 53.8
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 3.9e-42 175.3 158 53.8
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 6.6e-42 174.5 160 53.8
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.9e-41 172.9 160 55.0
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 5.6e-41 171.4 157 56.1
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 9.6e-41 170.6 158 52.5
C09p46380 Brassica napus HOM05D001579 ORTHO05D003470 1.2e-40 170.2 160 54.4
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 2.8e-40 169.1 163 52.1
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 8.1e-40 167.5 158 56.3
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 1.4e-39 166.8 162 53.1
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 9.0e-39 164.1 165 55.8
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 9.0e-39 164.1 157 53.5
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 1.5e-38 163.3 157 53.5
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 1.5e-38 163.3 157 53.5
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 1.5e-38 163.3 157 53.5
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-38 163.3 165 52.7
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 2.0e-38 162.9 157 53.5
HPP92_002580 Vanilla planifolia HOM05D001579 ORTHO05D003470 2.6e-38 162.5 156 52.6
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 4.4e-38 161.8 157 53.5
A10p12820 Brassica napus HOM05D001579 ORTHO05D003470 7.6e-38 161.0 160 51.2
BraA10t43375Z Brassica rapa HOM05D001579 ORTHO05D003470 7.6e-38 161.0 160 51.2
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.7e-37 159.8 165 52.1
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 2.2e-37 159.5 165 51.5
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.2e-37 159.5 165 51.5
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.2e-37 159.5 165 51.5
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.9e-37 159.1 162 56.2
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.9e-37 159.1 166 51.2
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 3.8e-37 158.7 166 51.2
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 6.4e-37 157.9 158 51.3
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.4e-36 156.8 166 50.6
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.4e-36 156.0 166 50.6
BcaB01g00883 Brassica carinata HOM05D001579 ORTHO05D003470 4.2e-36 155.2 140 56.4
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 5.4e-36 154.8 166 50.0
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 7.1e-36 154.5 110 68.2
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 7.1e-36 154.5 154 49.4
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 1.7e-34 149.8 158 48.1
RcHm_v2.0_Chr6g0259031 Rosa chinensis HOM05D001579 ORTHO05D003470 2.3e-34 149.4 161 49.7
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 1.1e-33 147.1 115 63.5
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 1.6e-32 143.3 158 49.4
SHI02915 Sapria himalayana HOM05D001579 ORTHO05D003470 1.8e-31 139.8 102 67.6
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 2.4e-31 139.4 157 43.3
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 5.3e-31 138.3 150 47.3
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 6.9e-31 137.9 160 49.4
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 4.5e-30 135.2 160 47.5
Aa31LG3G6010 Aethionema arabicum HOM05D001579 ORTHO05D003470 9.9e-30 134.0 111 63.1
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 9.9e-30 134.0 104 66.3
Rhsim05G0074300 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.4e-28 130.2 148 54.1
ATR1101G051 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.3e-26 123.6 81 70.4
SEGI_12575 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 3.3e-25 119.0 73 75.3
Cre09.g389430 Chlamydomonas reinhardtii HOM05D001579 ORTHO05D003470 7.4e-25 117.9 162 40.1
BcaC03g13561 Brassica carinata HOM05D001579 ORTHO05D017611 1.6e-24 116.7 119 52.1
arahy.Tifrunner.gnm1.ann1.5AJQ1U Arachis hypogaea HOM05D001579 ORTHO05D003470 2.1e-24 116.3 82 63.4
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 4.0e-23 112.1 161 42.9
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 4.0e-23 112.1 161 42.9
Duzib248G0143 Durio zibethinus HOM05D001579 ORTHO05D003470 1.2e-22 110.5 102 61.8
CBR_g23301 Chara braunii HOM05D001579 ORTHO05D003470 7.6e-22 107.8 160 39.4
BcaC01g00633 Brassica carinata HOM05D001579 ORTHO05D003470 1.9e-20 103.2 91 58.2
BcaC08g46253 Brassica carinata HOM05D001579 ORTHO05D003470 1.9e-20 103.2 126 48.4
Hma1.2p1_0052F.1_g030760 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 3.2e-20 102.4 110 50.9
C02p09550 Brassica napus HOM05D001579 ORTHO05D017611 3.0e-18 95.9 96 52.1
BraA01t04658Z Brassica rapa HOM05D001579 ORTHO05D017611 5.6e-17 91.7 93 50.5
PRCOL_00000627 Prasinoderma coloniale HOM05D001579 ORTHO05D003470 5.6e-17 91.7 143 37.1
A10p05500 Brassica napus HOM05D001579 ORTHO05D017611 6.2e-16 88.2 93 48.4
MCO10G005 Micromonas commoda HOM05D001579 ORTHO05D003470 6.2e-16 88.2 145 36.6
Hma1.2p1_3239F.1_g334310 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 8.2e-16 87.8 77 51.9
A03p60490 Brassica napus HOM05D001579 ORTHO05D017611 5.3e-15 85.1 89 49.4
CARHR112750 Cardamine hirsuta HOM05D001579 ORTHO05D003470 3.8e-13 79.0 102 47.1
A09p15640 Brassica napus HOM05D001579 ORTHO05D017611 1.1e-12 77.4 73 54.8
BraA09t37204Z Brassica rapa HOM05D001579 ORTHO05D003470 1.1e-12 77.4 73 54.8
BraA10t42813Z Brassica rapa HOM05D001579 ORTHO05D017611 1.1e-12 77.4 81 49.4
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 3.2e-12 75.9 118 39.8
Actinidia08226 Actinidia chinensis HOM05D001579 ORTHO05D030913 5.7e-09 65.1 33 90.9
SEGI_17547 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.7e-09 65.1 49 59.2
Hma1.2p1_0681F.1_g202440 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 9.7e-09 64.3 41 73.2
A04p16550 Brassica napus HOM05D001264 ORTHO05D017611 2.8e-08 62.8 51 58.8
BcaB04g20106 Brassica carinata HOM05D001579 ORTHO05D003470 3.1e-07 59.3 71 43.7
Medtr7g038870 Medicago truncatula HOM05D009713 ORTHO05D001923 6.9e-07 58.2 69 49.3
Cfa025854 Carpinus fangiana HOM05D001579 ORTHO05D003470 1.0e-05 54.3 131 32.1


User provided reference genes

Program Settings