Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1124.4 558 100.0
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 1.5e-221 773.1 636 66.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.6e-198 694.5 549 68.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 2.1e-191 672.9 553 66.2
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 6.5e-185 651.4 549 64.3
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 8.4e-185 651.0 549 63.6
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 5.5e-184 648.3 549 63.2
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 5.5e-184 648.3 549 63.2
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 4.3e-173 612.1 549 61.0
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 8.2e-172 607.8 548 60.8
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 1.8e-171 606.7 548 60.2
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 5.9e-170 601.7 548 59.7
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 6.5e-169 598.2 548 60.0
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 1.9e-168 596.7 549 61.0
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 2.5e-168 596.3 548 60.0
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.5e-168 596.3 548 59.9
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 1.8e-166 590.1 548 58.9
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.3e-166 589.7 548 59.5
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 7.4e-165 584.7 558 57.9
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 1.4e-163 580.5 548 58.0
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 4.1e-163 578.9 548 58.8
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 5.3e-163 578.6 550 58.2
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.0e-162 576.6 548 57.3
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 2.6e-162 576.2 556 56.3
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 4.5e-162 575.5 548 58.8
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 1.3e-161 573.9 549 58.1
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 2.9e-161 572.8 549 57.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 1.4e-160 570.5 551 57.5
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 2.5e-160 569.7 548 56.9
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 5.5e-160 568.5 548 56.8
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 7.2e-160 568.2 555 57.1
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 9.4e-160 567.8 549 57.0
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 1.6e-159 567.0 556 55.4
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 4.7e-159 565.5 549 56.8
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 1.0e-158 564.3 548 56.2
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 2.3e-158 563.1 548 55.8
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 5.1e-158 562.0 549 57.0
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 8.8e-158 561.2 545 57.8
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 2.0e-157 560.1 553 55.2
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 1.3e-156 557.4 548 54.7
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 1.3e-156 557.4 548 55.8
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 1.7e-156 557.0 549 56.3
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 8.2e-156 554.7 551 55.9
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 3.1e-155 552.7 550 55.8
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 3.1e-155 552.7 555 55.7
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 9.1e-155 551.2 548 54.9
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 2.6e-154 549.7 556 54.3
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 6.5e-153 545.0 556 53.8
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 1.1e-152 544.3 552 55.3
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 5.5e-152 542.0 555 54.6
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 8.8e-150 534.6 550 54.5
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 4.4e-149 532.3 548 54.4
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.7e-148 530.4 548 53.3
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.3e-148 528.5 548 53.5
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 3.1e-147 526.2 539 53.8
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 2.6e-146 523.1 553 54.1
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 3.5e-146 522.7 550 53.8
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 4.2e-144 515.8 545 51.9
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 1.2e-143 514.2 545 51.7
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 1.6e-143 513.8 549 52.3
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 4.7e-143 512.3 548 52.9
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.8e-142 510.4 547 51.9
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 2.3e-142 510.0 548 52.0
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 8.8e-142 508.1 548 52.7
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.1e-139 501.1 547 51.6
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 1.2e-138 497.7 547 51.6
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 7.7e-138 495.0 559 51.5
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 1.0e-137 494.6 547 50.8
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 2.2e-137 493.4 548 51.3
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 2.2e-137 493.4 548 51.3
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 3.8e-137 492.7 547 51.0
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 5.0e-137 492.3 548 51.1
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 1.9e-136 490.3 547 51.0
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 1.9e-136 490.3 547 51.0
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 9.4e-136 488.0 547 51.2
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 9.4e-136 488.0 547 51.0
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 2.7e-135 486.5 547 50.8
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 4.7e-135 485.7 547 51.2
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 3.0e-134 483.0 547 50.5
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 6.8e-134 481.9 547 50.3
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 6.6e-129 465.3 551 49.7
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 3.4e-125 453.0 546 49.5
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 8.3e-124 448.4 228 96.5
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 2.4e-123 446.8 555 47.6
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 2.0e-122 443.7 548 47.4
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 9.2e-115 418.3 550 45.3
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 6.4e-108 395.6 413 54.5
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 8.6e-105 385.2 550 43.8
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 2.1e-103 380.6 551 43.2
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 9.2e-99 365.2 551 43.0
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 6.4e-92 342.4 550 41.8
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 7.9e-82 308.9 567 38.6
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 1.3e-76 291.6 577 36.4
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.6e-63 248.1 256 53.1
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.0e-48 198.0 288 42.7
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 2.8e-47 194.1 453 34.9
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 3.1e-46 190.7 461 33.8
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 5.9e-45 186.4 250 46.4
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.8e-38 164.9 83 97.6
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.2e-34 152.1 280 33.9
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 5.5e-27 126.7 132 51.5
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.0e-09 69.3 235 30.2


User provided reference genes

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