Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 7.3e-102 374.0 205 100.0
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 2.3e-55 219.5 197 69.0
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 4.7e-40 168.7 162 63.0
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 3.0e-31 139.4 163 54.6
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 1.3e-29 134.0 190 46.8
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 9.1e-28 127.9 161 49.1
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 2.0e-27 126.7 148 54.1
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 7.7e-27 124.8 191 46.1
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 1.5e-25 120.6 160 46.9
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 5.5e-25 118.6 159 47.8
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 9.4e-25 117.9 157 50.3
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 1.6e-24 117.1 160 48.8
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 6.1e-24 115.2 160 47.5
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.8e-23 113.6 166 45.8
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 6.8e-23 111.7 159 45.3
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 1.5e-22 110.5 161 47.8
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 3.4e-22 109.4 189 42.3
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.7e-21 107.1 161 47.2
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.2e-21 106.7 161 45.3
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 2.8e-21 106.3 160 43.8
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 3.7e-21 105.9 154 45.5
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 4.8e-21 105.5 161 42.2
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 8.3e-21 104.8 154 45.5
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 1.8e-20 103.6 154 45.5
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 3.1e-20 102.8 157 46.5
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 4.1e-20 102.4 155 44.5
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 5.4e-20 102.1 116 54.3
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.2e-19 100.9 162 43.2
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 1.6e-19 100.5 158 43.7
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.6e-19 100.5 153 45.1
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.6e-19 100.5 165 39.4
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 1.0e-18 97.8 100 57.0
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 1.0e-18 97.8 152 42.1
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 1.3e-18 97.4 187 39.6
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 2.3e-18 96.7 189 39.2
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 2.9e-18 96.3 143 43.4
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 6.5e-18 95.1 152 41.4
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 6.5e-18 95.1 153 43.8
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 8.6e-18 94.7 152 42.8
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 1.5e-17 94.0 158 41.8
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.9e-17 93.6 164 40.2
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 2.5e-17 93.2 186 37.6
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 3.2e-17 92.8 162 40.1
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 4.2e-17 92.4 182 36.3
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 5.5e-17 92.0 182 36.3
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 7.2e-17 91.7 178 41.0
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 7.2e-17 91.7 190 38.4
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 7.2e-17 91.7 104 50.0
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 9.5e-17 91.3 155 40.6
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 1.2e-16 90.9 152 42.1
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 1.6e-16 90.5 154 39.0
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 2.1e-16 90.1 152 42.1
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 2.1e-16 90.1 152 42.1
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 2.1e-16 90.1 152 42.1
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 2.1e-16 90.1 159 40.9
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 2.1e-16 90.1 156 42.3
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 3.6e-16 89.4 152 42.1
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 6.1e-16 88.6 103 48.5
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.8e-15 87.0 136 42.6
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 4.0e-15 85.9 150 41.3
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.5e-14 84.0 150 38.7
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 2.6e-14 83.2 150 40.0
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 4.4e-14 82.4 189 33.3
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 5.7e-14 82.0 160 39.4
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 5.7e-14 82.0 141 43.3
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 5.7e-14 82.0 82 54.9
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 7.5e-14 81.6 174 36.2
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 9.8e-14 81.3 159 37.7
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.3e-13 80.9 159 35.8
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.3e-13 80.9 173 38.7
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 1.7e-13 80.5 82 50.0
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 2.8e-13 79.7 81 50.6
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 2.8e-13 79.7 78 50.0
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 6.3e-13 78.6 86 54.7
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 8.3e-13 78.2 197 34.0
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 8.3e-13 78.2 170 32.9
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 4.1e-12 75.9 235 31.9
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 9.2e-12 74.7 79 50.6
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 3.5e-11 72.8 160 37.5
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 4.5e-11 72.4 69 56.5
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 1.0e-10 71.2 201 31.8
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 2.9e-10 69.7 81 43.2
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 3.8e-10 69.3 171 32.7
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 6.6e-10 68.6 176 32.4
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 6.6e-10 68.6 176 32.4
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 2.1e-08 63.5 78 41.0
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 3.0e-07 59.7 160 32.5
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.2e-06 57.8 119 40.3
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 2.6e-06 56.6 167 30.5
CSS0011431 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 3.4e-06 56.2 71 47.9
CSS0043730 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 3.4e-06 56.2 71 47.9
CSS0032551 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 4.4e-06 55.8 71 47.9
CSS0043606 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 5.7e-06 55.5 56 55.4
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 5.7e-06 55.5 158 30.4
CSS0033374 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 9.8e-06 54.7 56 53.6


User provided reference genes

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