Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.6e-100 368.2 185 100.0
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 7.7e-42 174.5 167 65.9
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.7e-39 166.0 166 63.9
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.0e-38 164.1 159 64.8
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.1e-35 152.5 167 57.5
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 6.9e-35 151.4 167 56.9
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.9e-34 148.3 167 56.9
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 9.4e-32 141.0 149 60.4
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.6e-31 140.2 162 55.6
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.6e-31 140.2 153 60.1
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 2.1e-31 139.8 166 54.2
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 2.1e-31 139.8 166 54.2
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 6.1e-31 138.3 163 54.6
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 6.1e-31 138.3 158 56.3
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 6.1e-31 138.3 152 57.9
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 6.1e-31 138.3 154 55.8
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 6.1e-31 138.3 154 55.8
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.8e-30 136.7 167 55.7
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 1.8e-30 136.7 153 55.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.3e-30 136.3 163 55.2
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.3e-30 136.3 153 56.2
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 3.0e-30 136.0 153 55.6
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 3.9e-30 135.6 159 56.6
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 3.9e-30 135.6 153 58.2
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 5.2e-30 135.2 153 55.6
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 5.2e-30 135.2 149 59.1
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 5.2e-30 135.2 164 55.5
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 5.2e-30 135.2 149 58.4
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 5.2e-30 135.2 153 58.8
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 6.7e-30 134.8 163 52.8
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.8e-30 134.4 163 55.8
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.5e-29 133.7 163 54.6
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.5e-29 133.7 145 59.3
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.5e-29 133.7 158 54.4
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.5e-29 133.7 144 59.0
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.0e-29 133.3 152 56.6
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.0e-29 133.3 152 56.6
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 3.3e-29 132.5 154 55.8
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.3e-29 132.5 146 57.5
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 4.4e-29 132.1 166 51.8
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 4.4e-29 132.1 163 50.3
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 5.7e-29 131.7 152 54.6
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 5.7e-29 131.7 154 55.8
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 7.4e-29 131.3 161 51.6
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 7.4e-29 131.3 163 54.0
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 7.4e-29 131.3 167 52.1
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 7.4e-29 131.3 153 54.9
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 9.7e-29 131.0 163 51.5
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 9.7e-29 131.0 145 58.6
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 9.7e-29 131.0 152 55.3
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.3e-28 130.6 153 55.6
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 1.3e-28 130.6 149 54.4
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.7e-28 130.2 144 59.7
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 2.2e-28 129.8 145 57.2
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.8e-28 129.4 163 54.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 3.7e-28 129.0 142 57.0
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.7e-28 129.0 163 50.9
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.7e-28 129.0 167 53.3
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 3.7e-28 129.0 167 53.3
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.8e-28 128.6 167 53.9
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 6.3e-28 128.3 142 59.2
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.3e-28 128.3 165 49.7
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 6.3e-28 128.3 153 52.9
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 6.3e-28 128.3 162 52.5
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 8.2e-28 127.9 154 52.6
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.8e-27 126.7 167 49.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.8e-27 126.7 162 51.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 2.4e-27 126.3 156 52.6
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.4e-27 126.3 143 57.3
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 2.4e-27 126.3 153 53.6
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 3.1e-27 125.9 141 56.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.1e-27 125.9 163 49.7
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.1e-27 125.9 163 50.3
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 3.1e-27 125.9 143 57.3
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 5.3e-27 125.2 152 53.9
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 7.0e-27 124.8 153 53.6
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 7.0e-27 124.8 141 56.7
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 7.0e-27 124.8 143 57.3
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.1e-27 124.4 153 53.6
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.2e-26 124.0 163 49.7
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.2e-26 124.0 158 54.4
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.6e-26 123.6 151 55.6
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.6e-26 123.6 144 58.3
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.6e-26 123.6 163 52.8
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.0e-26 123.2 128 59.4
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 2.0e-26 123.2 128 59.4
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.6e-26 122.9 128 60.9
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.5e-26 122.5 153 52.9
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.5e-26 122.5 138 56.5
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.5e-26 122.1 161 50.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 4.5e-26 122.1 153 52.9
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.9e-26 121.7 151 55.0
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 7.7e-26 121.3 140 56.4
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 7.7e-26 121.3 143 55.9
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.0e-25 120.9 129 58.1
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.0e-25 120.9 129 58.1
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.7e-25 120.2 144 55.6
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.7e-25 120.2 144 53.5
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.2e-25 119.8 142 56.3
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.9e-25 119.4 150 52.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 2.9e-25 119.4 128 58.6
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.8e-25 119.0 128 57.8
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.1e-24 117.5 161 47.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.5e-24 116.3 127 55.9
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.2e-24 115.5 161 47.8
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 9.4e-24 114.4 157 50.3
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 9.4e-24 114.4 149 52.3
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.3e-22 109.8 131 55.0
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.8e-22 107.8 145 53.1
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 2.6e-21 106.3 127 52.0
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 9.7e-21 104.4 123 52.0
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.3e-20 104.0 133 52.6
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.2e-20 103.2 149 47.7
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.2e-20 103.2 149 45.0
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.8e-20 102.8 113 56.6
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 3.7e-20 102.4 126 55.6
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 8.2e-20 101.3 151 47.0
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 5.3e-19 98.6 123 55.3
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 5.3e-19 98.6 123 55.3
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 7.0e-19 98.2 149 47.7
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 7.0e-19 98.2 149 47.7
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 3.5e-18 95.9 126 51.6
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.5e-16 89.7 121 51.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 5.5e-16 88.6 133 49.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.2e-15 87.4 70 70.0
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 4.7e-15 85.5 115 52.2
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 8.0e-15 84.7 115 52.2
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.8e-14 83.6 121 42.1
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.3e-14 83.2 123 43.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 6.8e-14 81.6 71 67.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.7e-12 77.0 62 69.4
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.7e-12 75.9 73 61.6
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 4.8e-12 75.5 127 37.0
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.1e-11 74.3 116 45.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.1e-11 74.3 73 60.3
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.8e-11 73.6 47 78.7
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 7.0e-11 71.6 150 34.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 9.1e-11 71.2 113 41.6
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.6e-10 70.5 54 75.9
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.9e-08 63.5 74 56.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 3.2e-08 62.8 50 68.0
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 7.2e-08 61.6 52 67.3
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.8e-07 59.7 62 59.7


User provided reference genes

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