Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 2.8e-117 425.2 210 100.0
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 4.5e-91 338.2 208 80.3
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 6.6e-90 334.3 207 79.7
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 2.5e-89 332.4 194 80.4
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.3e-89 332.0 211 77.7
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.0e-87 327.0 211 75.4
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.8e-87 326.2 212 75.5
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.8e-87 326.2 213 74.2
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 6.8e-87 324.3 212 74.1
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 6.8e-87 324.3 207 76.3
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 3.4e-86 322.0 211 75.8
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 5.8e-86 321.2 211 74.9
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 7.5e-86 320.9 211 74.4
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 9.8e-86 320.5 209 75.1
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.7e-85 319.7 207 74.4
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.7e-85 319.7 211 74.4
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.2e-85 319.3 212 74.1
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 2.2e-85 319.3 210 72.9
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 2.9e-85 318.9 210 71.9
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.7e-85 318.5 208 74.5
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 1.1e-84 317.0 209 74.6
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.4e-84 316.6 211 73.5
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.4e-84 316.6 211 73.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.9e-84 316.2 211 75.8
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.9e-84 316.2 208 73.6
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 3.2e-84 315.5 210 72.4
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 3.2e-84 315.5 209 75.6
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 7.0e-84 314.3 205 75.1
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 9.2e-84 313.9 209 75.6
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.2e-83 313.5 206 72.8
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.6e-83 313.2 213 75.1
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 3.5e-83 312.0 215 72.6
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 4.6e-83 311.6 209 73.2
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.0e-82 310.5 209 71.3
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 1.3e-82 310.1 209 71.8
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.3e-82 310.1 209 72.7
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 2.3e-82 309.3 212 71.2
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 3.0e-82 308.9 211 71.1
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.0e-82 308.9 211 71.6
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 3.0e-82 308.9 205 73.2
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.9e-82 308.5 209 72.7
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 5.0e-82 308.1 210 70.0
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 8.6e-82 307.4 210 70.0
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 8.6e-82 307.4 205 74.1
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.1e-81 307.0 206 72.3
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.1e-81 307.0 210 69.5
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.1e-81 307.0 205 72.2
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.5e-81 306.6 205 72.2
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 1.9e-81 306.2 210 69.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.5e-81 305.8 209 72.2
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 3.3e-81 305.4 209 73.2
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 5.6e-81 304.7 209 70.3
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 5.6e-81 304.7 212 70.3
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 7.3e-81 304.3 206 71.8
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 1.2e-80 303.5 206 71.8
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 1.2e-80 303.5 212 69.3
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.2e-80 303.5 216 70.8
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 2.8e-80 302.4 211 69.2
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.1e-79 300.4 205 70.2
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.4e-79 300.1 209 70.3
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.3e-79 299.3 209 69.4
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 3.1e-79 298.9 233 63.1
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 5.2e-79 298.1 207 68.6
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.2e-78 297.0 205 70.2
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 2.6e-78 295.8 205 69.8
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 3.4e-78 295.4 187 73.3
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 9.8e-78 293.9 209 67.5
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.2e-77 292.7 209 67.5
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 2.9e-77 292.4 206 68.9
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 4.9e-77 291.6 207 69.1
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 4.9e-77 291.6 207 69.1
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 6.4e-77 291.2 207 69.1
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 6.4e-77 291.2 207 68.6
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 6.4e-77 291.2 207 68.6
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.1e-76 290.4 207 69.1
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 2.4e-76 289.3 205 66.8
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 2.4e-76 289.3 207 68.6
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 4.1e-76 288.5 207 68.1
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 4.1e-76 288.5 207 68.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 7.1e-76 287.7 207 68.1
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 9.2e-76 287.3 207 67.6
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 9.2e-76 287.3 207 68.1
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.6e-75 286.6 207 66.7
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 3.5e-75 285.4 206 68.4
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 4.6e-75 285.0 207 66.2
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 7.8e-75 284.3 206 67.0
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 1.0e-74 283.9 215 64.2
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.1e-73 280.4 186 73.7
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.1e-73 280.4 210 64.8
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 2.5e-73 279.3 206 65.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 4.3e-73 278.5 212 64.2
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 4.7e-72 275.0 216 65.7
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 6.2e-72 274.6 203 64.0
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.4e-71 273.5 205 65.9
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 1.5e-70 270.0 211 66.4
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 4.4e-70 268.5 157 80.9
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 5.8e-70 268.1 157 79.6
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 2.2e-69 266.2 240 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 4.9e-69 265.0 203 62.6
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 6.0e-67 258.1 158 78.5
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 6.0e-67 258.1 173 74.0
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 1.5e-65 253.4 158 74.1
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.3e-65 252.3 166 74.1
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 5.6e-65 251.5 203 61.6
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.6e-64 250.0 168 72.6
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 3.6e-64 248.8 208 58.7
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 3.6e-64 248.8 203 61.1
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.1e-63 247.3 192 65.1
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.6e-62 242.7 176 65.9
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.1e-49 200.7 160 58.8
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 5.6e-49 198.4 142 66.9
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 3.4e-46 189.1 211 46.0
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 2.7e-43 179.5 134 64.2
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 3.9e-42 175.6 212 44.3
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 1.1e-39 167.5 95 84.2
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 1.7e-37 160.2 211 45.5
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 1.2e-35 154.1 157 50.3
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.5e-33 147.1 221 40.3
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.5e-33 147.1 221 40.3
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 9.6e-33 144.4 123 57.7
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 9.6e-33 144.4 123 57.7
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.2e-22 110.9 96 59.4
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 3.6e-19 99.4 196 35.7
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.3e-18 96.7 53 84.9
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.3e-18 96.7 52 86.5
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 8.2e-16 88.2 53 81.1
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 4.1e-15 85.9 66 63.6
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.3e-15 85.5 57 64.9
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 4.5e-14 82.4 71 56.3
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.5e-12 76.6 44 77.3
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 9.4e-12 74.7 38 89.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 6.1e-11 72.0 51 62.7
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.0e-10 69.7 136 39.0
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 4.8e-08 62.4 39 76.9
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 4.8e-08 62.4 36 66.7
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 3.1e-07 59.7 33 81.8
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 3.1e-07 59.7 38 78.9
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 9.1e-07 58.2 57 52.6


User provided reference genes

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