Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 4.6e-139 498.0 280 100.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 7.7e-86 321.2 322 64.0
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.4e-84 317.0 323 64.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 7.2e-52 208.4 324 48.5
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.6e-46 190.7 329 42.9
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.3e-45 187.6 344 45.3
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.2e-42 175.6 348 39.4
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 4.9e-40 169.1 386 35.8
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 2.4e-39 166.8 385 41.3
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.2e-39 166.4 384 38.0
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 7.0e-39 165.2 379 37.5
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.0e-38 163.7 379 34.3
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 2.7e-38 163.3 342 36.5
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 6.0e-38 162.2 308 37.3
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 6.0e-38 162.2 308 37.3
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.7e-37 160.6 380 38.7
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 3.0e-37 159.8 358 40.5
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.9e-37 159.5 343 35.0
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 2.5e-36 156.8 388 39.9
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 9.5e-36 154.8 361 35.5
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 9.5e-36 154.8 387 37.2
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.6e-35 154.1 388 39.7
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.6e-35 154.1 383 37.6
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 8.1e-35 151.8 382 36.9
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 8.1e-35 151.8 382 36.9
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.4e-34 151.0 343 40.2
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.3e-34 150.2 393 39.4
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 4.0e-34 149.4 379 36.9
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.2e-33 147.9 407 31.7
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.2e-33 147.9 354 34.7
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.5e-33 147.5 404 34.9
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.6e-33 146.7 351 34.2
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 2.6e-33 146.7 356 37.9
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 3.4e-33 146.4 376 39.9
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.4e-33 146.4 380 39.5
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 4.4e-33 146.0 375 33.9
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 9.8e-33 144.8 379 34.6
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.2e-32 143.7 374 41.2
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 2.2e-32 143.7 378 34.9
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.2e-32 143.7 336 37.2
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 3.7e-32 142.9 391 33.0
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 3.7e-32 142.9 391 33.0
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-32 142.9 388 36.6
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.4e-32 142.1 393 39.2
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 6.4e-32 142.1 393 35.1
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 8.3e-32 141.7 396 36.1
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.4e-31 141.0 373 36.2
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.4e-31 141.0 350 39.7
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.9e-31 140.6 353 33.1
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.4e-31 140.2 395 35.9
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 3.2e-31 139.8 374 38.5
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.4e-31 139.0 394 39.3
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 7.1e-31 138.7 396 35.6
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.2e-31 138.3 328 36.0
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.6e-30 137.5 394 32.5
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-30 137.5 395 39.2
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.6e-30 137.5 328 36.3
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-30 137.1 392 34.9
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.7e-30 136.7 360 33.3
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 4.6e-30 136.0 268 38.1
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.6e-30 136.0 338 35.2
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.7e-29 134.0 382 34.8
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.3e-29 133.7 367 32.7
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 8.6e-29 131.7 383 30.8
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 8.6e-29 131.7 375 33.1
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 2.5e-28 130.2 286 42.0
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 2.5e-28 130.2 340 34.1
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 4.3e-28 129.4 347 39.8
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 9.5e-28 128.3 343 41.4
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 2.8e-27 126.7 401 30.2
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 4.7e-27 125.9 228 41.7
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.7e-27 125.9 344 34.6
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 8.1e-27 125.2 340 30.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 1.1e-26 124.8 405 30.6
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.2e-26 122.5 320 32.2
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-25 121.3 344 39.2
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-25 121.3 344 39.2
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.2e-25 121.3 362 39.2
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.2e-25 121.3 373 37.8
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 5.8e-25 119.0 321 32.1
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 5.8e-25 119.0 321 32.1
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.9e-24 115.9 373 33.0
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.9e-24 115.9 373 33.0
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 6.4e-24 115.5 202 39.1
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 8.4e-24 115.2 330 32.7
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.2e-23 113.2 373 35.9
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 5.4e-23 112.5 400 32.5
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-22 111.3 356 29.5
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-22 111.3 356 29.5
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.7e-21 107.5 306 31.4
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 2.3e-21 107.1 179 41.9
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.0e-21 106.7 357 28.9
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 5.1e-21 105.9 131 66.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.9e-20 104.0 360 30.8
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.5e-20 103.6 336 31.0
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 3.3e-20 103.2 253 35.6
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 7.3e-20 102.1 314 30.6
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.1e-19 100.5 375 34.4
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 3.6e-19 99.8 346 30.3
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 4.7e-19 99.4 362 37.3
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 6.2e-19 99.0 419 31.0
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 8.1e-19 98.6 369 34.7
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 8.1e-19 98.6 355 30.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.1e-18 98.2 392 34.2
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 3.1e-18 96.7 325 30.5
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 8.9e-18 95.1 351 30.2
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 9.9e-17 91.7 415 27.5
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.7e-16 90.9 110 49.1
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 3.8e-16 89.7 319 32.6
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 3.8e-16 89.7 319 32.6
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 4.9e-16 89.4 333 28.8
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 6.4e-16 89.0 356 36.8
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 8.4e-16 88.6 244 34.8
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 5.4e-15 85.9 354 33.1
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 7.8e-14 82.0 240 31.7
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.3e-13 81.3 365 27.1
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.7e-13 80.9 407 26.3
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.5e-12 77.8 405 31.1
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 7.3e-12 75.5 148 39.9
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.3e-11 74.7 348 25.9
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-11 74.3 367 27.0
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.6e-11 74.3 125 56.8
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 1.8e-10 70.9 407 26.3
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 9.0e-10 68.6 98 60.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 2.6e-09 67.0 386 25.6
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.4e-09 66.2 96 39.6
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 7.6e-09 65.5 443 29.3
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.3e-08 64.7 222 30.2
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.7e-08 64.3 385 24.9
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 4.9e-08 62.8 414 24.9
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 6.4e-08 62.4 103 39.8
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 8.4e-08 62.0 398 27.1
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.4e-07 61.2 414 25.4
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-07 60.8 215 39.1
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 3.2e-07 60.1 401 30.7
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 3.2e-07 60.1 398 24.1
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 4.2e-07 59.7 398 26.9
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 5.4e-07 59.3 412 25.0
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.2e-06 58.2 414 25.1
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 2.1e-06 57.4 414 24.6
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 2.7e-06 57.0 438 24.0
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 3.5e-06 56.6 208 29.3
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.5e-06 56.6 226 30.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 6.0e-06 55.8 228 35.1
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 6.0e-06 55.8 230 29.1
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 7.9e-06 55.5 405 30.1


User provided reference genes

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