Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 3.9e-187 657.9 317 100.0
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 4.5e-175 617.8 317 92.7
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 8.8e-163 577.0 322 86.0
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 5.0e-158 561.2 315 83.5
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 6.1e-156 554.3 316 82.6
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 4.7e-148 528.1 315 77.5
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 4.0e-147 525.0 316 77.8
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.2e-146 523.5 315 75.2
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.3e-145 520.0 315 76.8
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 2.8e-145 518.8 315 76.8
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.7e-145 518.5 317 76.7
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 3.7e-145 518.5 315 75.2
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 4.8e-145 518.1 315 75.2
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 3.1e-144 515.4 318 75.8
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 4.1e-144 515.0 315 75.2
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 5.4e-144 514.6 316 76.6
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.0e-143 512.7 316 75.9
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.7e-143 512.3 316 75.3
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 4.5e-143 511.5 315 75.6
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 5.9e-143 511.1 317 74.8
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 5.9e-143 511.1 367 67.6
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.0e-142 510.4 316 75.0
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.7e-142 509.6 317 76.0
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.7e-142 509.6 318 75.8
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 3.8e-142 508.4 319 76.8
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.5e-142 507.7 317 77.3
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.1e-141 506.9 321 74.1
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.5e-141 506.5 317 74.8
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.9e-141 506.1 315 74.6
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 2.5e-141 505.8 316 75.0
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 4.2e-141 505.0 315 74.6
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 4.2e-141 505.0 317 72.9
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.5e-141 504.6 319 73.4
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.5e-141 504.6 319 74.0
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.2e-140 503.4 317 72.9
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.6e-140 503.1 316 73.7
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.6e-140 503.1 316 74.7
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.1e-140 502.7 317 72.2
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.7e-140 502.3 321 74.1
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.7e-140 501.5 319 73.7
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 8.0e-140 500.7 316 73.7
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 8.0e-140 500.7 316 74.4
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.3e-139 499.2 315 72.4
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 3.0e-139 498.8 369 66.7
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 3.0e-139 498.8 316 73.4
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 5.2e-139 498.0 318 73.3
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 8.8e-139 497.3 303 77.2
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.2e-138 496.9 316 73.1
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.5e-138 496.5 319 74.0
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.5e-138 496.5 315 72.4
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 4.4e-138 495.0 315 73.7
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.7e-138 494.6 317 74.1
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 9.8e-138 493.8 316 73.1
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.7e-137 493.0 316 74.1
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 3.7e-137 491.9 316 72.5
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 4.9e-137 491.5 316 73.4
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 4.9e-137 491.5 316 73.4
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.3e-137 491.1 317 75.7
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.4e-136 490.0 316 72.8
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-136 489.6 316 70.9
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.8e-136 489.6 316 70.9
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.8e-136 489.6 315 74.3
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.8e-136 489.6 322 71.1
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 3.1e-136 488.8 316 73.1
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.1e-136 488.8 315 72.7
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.1e-136 488.8 316 73.4
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 4.1e-136 488.4 315 71.1
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 9.2e-136 487.3 318 73.3
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.0e-135 486.1 313 72.5
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 2.7e-135 485.7 319 71.8
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 4.5e-135 485.0 314 72.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 4.5e-135 485.0 320 71.6
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 7.7e-135 484.2 317 71.6
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 7.7e-135 484.2 315 71.7
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 7.7e-135 484.2 315 73.0
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.7e-134 483.0 316 71.2
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.7e-134 483.0 318 72.3
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.7e-134 483.0 318 71.4
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 6.6e-134 481.1 315 71.1
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 8.6e-134 480.7 331 68.6
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-133 480.3 317 71.6
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.1e-133 480.3 316 70.6
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.9e-133 479.6 317 71.6
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.9e-133 479.6 317 71.3
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.5e-133 479.2 316 71.2
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 2.5e-133 479.2 313 71.2
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 7.3e-133 477.6 316 71.8
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.2e-132 476.9 338 67.8
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.6e-132 476.5 315 69.5
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.0e-131 473.8 315 70.8
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.0e-131 473.8 307 72.0
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.4e-131 473.4 316 70.9
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 6.8e-131 471.1 311 71.4
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 6.8e-131 471.1 316 70.6
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.5e-130 469.9 311 71.1
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 2.0e-130 469.5 316 70.9
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 2.6e-130 469.2 316 70.9
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 3.4e-130 468.8 316 70.9
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 4.4e-130 468.4 316 70.6
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 5.7e-130 468.0 316 70.9
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 7.5e-130 467.6 316 70.6
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 7.5e-130 467.6 316 70.9
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 7.5e-130 467.6 316 70.3
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 9.8e-130 467.2 316 70.6
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 9.8e-130 467.2 316 70.6
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.3e-129 466.8 316 70.9
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 8.3e-129 464.2 315 72.1
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 8.3e-129 464.2 316 68.7
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.4e-128 463.4 315 69.5
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.8e-128 463.0 316 69.9
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 3.2e-128 462.2 316 70.6
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.2e-128 462.2 315 68.9
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.2e-127 460.3 292 70.5
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.7e-127 459.1 318 69.8
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 2.7e-127 459.1 389 58.6
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.0e-126 457.2 315 68.6
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.7e-126 456.4 321 67.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 8.6e-126 454.1 335 65.1
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.3e-121 440.3 324 63.9
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.2e-121 439.5 267 76.8
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 5.4e-120 434.9 319 66.5
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.3e-118 430.3 279 73.8
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.7e-118 429.9 400 56.0
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.5e-117 426.8 289 71.6
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.5e-117 426.0 316 64.6
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.6e-117 424.9 289 69.9
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 2.8e-116 422.5 337 60.8
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.9e-109 399.8 317 59.9
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.2e-108 397.1 321 59.5
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.4e-107 393.7 332 58.4
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.9e-105 385.2 317 59.6
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.9e-104 383.3 317 57.7
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.4e-104 382.9 315 57.8
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 7.8e-103 377.9 321 59.5
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 4.3e-101 372.1 304 63.2
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 4.3e-101 372.1 242 74.0
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.4e-96 356.3 292 59.2
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 3.6e-92 342.4 225 72.4
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 3.4e-90 335.9 353 46.5
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 3.8e-81 305.8 199 71.9
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.1e-77 294.3 220 63.6
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.9e-77 293.5 182 75.8
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 2.7e-71 273.1 185 70.8
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.8e-68 262.3 305 50.5
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.2e-64 249.2 165 70.9
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 9.3e-64 248.1 144 79.9
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-63 247.7 187 66.3
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 4.1e-59 232.6 151 74.2
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 6.5e-57 225.3 140 72.9
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 3.1e-43 179.9 147 57.8
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.1e-39 167.2 124 64.5
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.5e-37 161.0 110 67.3
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.2e-36 157.1 124 61.3
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 9.1e-35 151.8 99 69.7
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 4.2e-32 142.9 90 74.4
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 6.8e-30 135.6 103 66.0
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 6.8e-30 135.6 92 68.5
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.1e-27 126.7 69 81.2
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 4.1e-27 126.3 90 63.3
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 7.7e-26 122.1 75 70.7
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 3.2e-24 116.7 67 76.1
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 5.5e-24 115.9 76 68.4
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 8.8e-22 108.6 169 38.5
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.2e-18 98.2 72 65.3
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.0e-17 95.1 58 70.7
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 9.2e-11 72.0 43 74.4
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 1.1e-08 65.1 88 40.9
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.5e-08 64.7 56 62.5
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.7e-07 59.7 80 48.8
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 6.8e-06 55.8 81 43.2


User provided reference genes

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