Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 0.0e+00 1309.7 650 100.0
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.9e-306 1054.7 724 77.6
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 6.9e-263 910.6 687 72.2
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 2.0e-225 786.2 690 60.6
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 8.2e-224 780.8 690 60.1
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 4.2e-220 768.5 697 59.1
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 2.0e-217 759.6 683 61.1
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 7.0e-215 751.1 681 58.3
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 3.5e-214 748.8 684 57.6
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 3.8e-213 745.3 686 58.9
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 6.5e-213 744.6 681 58.7
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.5e-212 743.4 680 57.8
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 5.5e-212 741.5 688 59.3
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 2.7e-211 739.2 653 60.5
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 3.6e-211 738.8 690 58.6
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 3.6e-211 738.8 685 58.8
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 4.4e-209 731.9 692 57.8
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 2.8e-208 729.2 688 57.6
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 3.7e-208 728.8 686 58.3
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 8.2e-208 727.6 677 57.9
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 7.0e-207 724.5 673 56.9
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 9.1e-207 724.2 658 59.7
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 9.1e-207 724.2 682 57.9
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.6e-206 723.4 669 57.0
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 2.0e-206 723.0 673 56.9
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 2.7e-206 722.6 676 58.0
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.5e-204 716.8 706 55.7
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 1.9e-204 716.5 675 59.1
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 3.2e-204 715.7 682 56.9
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 3.2e-204 715.7 694 55.6
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 4.2e-204 715.3 683 57.4
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 7.2e-204 714.5 683 56.8
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 1.6e-203 713.4 675 58.7
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 1.6e-203 713.4 686 56.9
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 2.1e-203 713.0 682 56.6
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 2.7e-203 712.6 686 56.3
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 3.6e-203 712.2 685 55.5
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 3.0e-202 709.1 677 57.2
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 5.7e-201 704.9 678 56.2
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 7.5e-201 704.5 714 55.2
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.3e-200 703.7 684 56.3
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 6.3e-200 701.4 686 57.7
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 1.8e-199 699.9 715 55.5
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 1.6e-198 696.8 677 56.4
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.0e-198 696.4 719 53.5
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 2.7e-198 696.0 676 56.4
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 5.0e-197 691.8 685 58.1
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 2.5e-196 689.5 662 56.9
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 4.2e-196 688.7 696 55.5
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 4.2e-196 688.7 686 55.5
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 7.2e-196 688.0 682 56.6
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 9.5e-196 687.6 571 62.5
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 2.8e-195 686.0 643 56.5
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 2.8e-195 686.0 686 56.4
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 3.6e-195 685.6 680 56.5
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 3.0e-194 682.6 688 54.1
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 3.4e-193 679.1 732 53.1
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 4.4e-193 678.7 684 55.3
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 6.3e-192 674.9 651 58.8
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 6.3e-192 674.9 681 55.1
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 1.4e-191 673.7 704 54.4
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.5e-190 669.1 655 56.2
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 4.5e-190 668.7 668 55.4
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 4.5e-190 668.7 676 54.9
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 5.9e-190 668.3 677 54.8
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 5.9e-190 668.3 683 56.1
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 1.1e-188 664.1 682 55.1
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.6e-187 660.2 680 55.1
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 2.1e-187 659.8 681 54.5
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 6.1e-187 658.3 680 54.9
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.8e-186 656.8 652 54.4
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 2.0e-185 653.3 676 55.2
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 4.9e-184 648.7 683 53.7
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.4e-183 647.1 681 54.3
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 3.5e-182 642.5 538 63.0
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 4.6e-182 642.1 680 54.6
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.7e-181 640.2 695 53.4
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 3.9e-181 639.0 661 54.8
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 2.3e-178 629.8 640 53.4
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.1e-172 610.9 414 76.3
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.1e-170 604.4 673 50.1
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 2.2e-168 596.7 634 53.2
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 1.6e-166 590.5 686 49.4
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 2.3e-165 586.6 670 50.4
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 3.9e-149 532.7 680 47.2
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 1.4e-143 514.2 549 52.5
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 4.3e-140 502.7 686 44.8
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 5.3e-138 495.7 598 49.0
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.3e-133 481.1 447 58.4
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 5.3e-130 469.2 433 58.7
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 2.0e-129 467.2 626 45.7
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 1.6e-126 457.6 490 50.8
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 9.7e-124 448.4 389 59.9
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.6e-123 447.6 621 44.8
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 6.9e-122 442.2 463 55.7
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 4.5e-105 386.3 560 42.9
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 5.0e-104 382.9 281 69.4
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 5.5e-103 379.4 500 43.8
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 3.6e-102 376.7 237 80.2
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.3e-99 368.2 625 40.3
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 1.3e-99 368.2 474 46.2
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.0e-93 348.6 245 72.7
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 7.7e-89 332.4 238 73.1
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 2.2e-83 314.3 393 46.6
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 4.5e-81 306.6 316 55.4
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 3.0e-77 293.9 335 51.6
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 1.7e-72 278.1 562 33.3
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 1.7e-67 261.5 200 67.5
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 3.7e-67 260.4 450 39.3
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 7.8e-65 252.7 362 42.5
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 4.7e-62 243.4 387 38.8
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 3.1e-61 240.7 325 45.2
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 6.8e-61 239.6 325 45.8
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 1.3e-59 235.3 288 51.4
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 7.1e-58 229.6 185 65.9
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 2.3e-53 214.5 170 67.6
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.2e-52 212.2 168 63.1
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.9e-50 204.9 237 49.4
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 2.4e-50 204.5 211 54.5
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 3.9e-48 197.2 155 66.5
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 6.6e-48 196.4 363 36.4
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.2e-42 177.2 222 47.3
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 7.1e-34 149.8 121 62.0
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 3.0e-32 144.4 135 56.3
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 2.4e-29 134.8 232 37.9
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 2.2e-27 128.3 120 52.5
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.3e-24 119.0 107 56.1
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 5.6e-23 113.6 133 53.4
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 4.2e-18 97.4 238 30.3
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 2.7e-17 94.7 81 54.3
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 4.6e-17 94.0 79 54.4
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 9.6e-15 86.3 51 90.2
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 8.2e-14 83.2 200 33.0
Actinidia36737 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.9e-11 74.7 95 49.5
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 3.8e-11 74.3 76 52.6
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 7.2e-10 70.1 52 61.5
Actinidia11693 Actinidia chinensis HOM05D005523 ORTHO05D026295 4.6e-09 67.4 35 80.0
Actinidia14170 Actinidia chinensis HOM05D005523 ORTHO05D026295 1.9e-07 62.0 82 46.3
Actinidia36736 Actinidia chinensis HOM05D005523 ORTHO05D026295 1.6e-06 58.9 53 54.7


User provided reference genes

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