Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10366 Vaccinium macrocarpon HOM05D007536 ORTHO05D009390 5.5e-110 402.5 587 100.0
Rhsim09G0137000 Rhododendron simsii HOM05D007536 ORTHO05D009390 5.2e-60 236.5 188 64.9
CSS0008501 Camellia sinensis var. sinensis HOM05D007536 ORTHO05D009390 9.8e-51 205.7 192 57.8
Dinv18987 Davidia involucrata HOM05D007536 ORTHO05D009390 9.6e-38 162.5 192 50.5
Lj2C43T1 Lonicera japonica HOM05D007536 ORTHO05D009390 2.3e-31 141.4 186 44.6
Dinv24676 Davidia involucrata HOM05D007536 ORTHO05D009390 3.0e-31 141.0 126 55.6
GSVIVG01023504001 Vitis vinifera HOM05D007536 ORTHO05D009390 6.9e-28 129.8 186 41.9
FAN14G0137 Fragaria x ananassa HOM05D007536 ORTHO05D009390 2.0e-27 128.3 178 41.0
TAR636G1433 Trochodendron aralioides HOM05D007536 ORTHO05D009390 7.6e-27 126.3 192 38.5
FvH4_6g01910 Fragaria vesca HOM05D007536 ORTHO05D009390 9.9e-27 125.9 178 40.4
RcHm_v2.0_Chr3g0449641 Rosa chinensis HOM05D007536 ORTHO05D009390 9.9e-27 125.9 181 41.4
Hma1.2p1_2103F.1_g314080 Hydrangea macrophylla HOM05D007536 ORTHO05D009390 3.8e-26 124.0 178 41.6
FAN09G4642 Fragaria x ananassa HOM05D007536 ORTHO05D009390 4.9e-26 123.6 178 40.4
TAR362G0895 Trochodendron aralioides HOM05D007536 ORTHO05D009390 4.9e-26 123.6 192 38.5
Cpa.g.sc162.41 Carica papaya HOM05D007536 ORTHO05D009390 7.1e-25 119.8 122 51.6
Prupe.6G350100 Prunus persica HOM05D007536 ORTHO05D009390 7.1e-25 119.8 178 39.9
Manes.08G053700 Manihot esculenta HOM05D007536 ORTHO05D009390 1.2e-24 119.0 188 41.0
Ciclev10019470m.g Citrus clementina HOM05D007536 ORTHO05D009390 2.1e-24 118.2 182 40.7
Oeu000315.1 Olea europaea HOM05D007536 ORTHO05D009390 3.5e-24 117.5 179 38.0
MBI10_g13809_MAGBIO Magnolia biondii HOM05D007536 ORTHO05D009390 2.3e-23 114.8 153 39.9
QL03p030462 Quercus lobata HOM05D007536 ORTHO05D009390 6.7e-23 113.2 188 39.9
Atru.chr2.985 Acer truncatum HOM05D007536 ORTHO05D009390 1.5e-22 112.1 183 37.2
CiPaw.15G107000 Carya illinoinensis HOM05D007536 ORTHO05D009390 3.3e-22 110.9 135 48.9
MD04G1230200 Malus domestica HOM05D007536 ORTHO05D009390 7.4e-22 109.8 178 39.9
FAN05G1587 Fragaria x ananassa HOM05D007536 ORTHO05D009390 1.3e-21 109.0 125 44.8
Thecc.05G270900 Theobroma cacao HOM05D007536 ORTHO05D009390 1.3e-21 109.0 152 45.4
Peaxi162Scf00528g00022 Petunia axillaris HOM05D007536 ORTHO05D009390 4.8e-21 107.1 191 37.2
Cc02_g08820 Coffea canephora HOM05D007536 ORTHO05D009390 6.2e-21 106.7 184 35.3
Nitab4.5_0003780g0060 Nicotiana tabacum HOM05D007536 ORTHO05D009390 2.4e-20 104.8 191 35.6
COL.COLO4_15481 Corchorus olitorius HOM05D007536 ORTHO05D009390 3.1e-20 104.4 130 43.8
TWI38G0843 Tripterygium wilfordii HOM05D007536 ORTHO05D009390 3.1e-20 104.4 187 37.4
Nitab4.5_0006737g0040 Nicotiana tabacum HOM05D007536 ORTHO05D009390 1.5e-19 102.1 191 35.1
MSTRG.10543 Avicennia marina HOM05D007536 ORTHO05D009390 3.4e-19 100.9 118 44.1
Haze_04425 Corylus avellana HOM05D007536 ORTHO05D009390 3.4e-19 100.9 189 38.6
FAN05G2252 Fragaria x ananassa HOM05D007536 ORTHO05D009390 7.6e-19 99.8 111 45.9
FAN14G3895 Fragaria x ananassa HOM05D007536 ORTHO05D009390 7.6e-19 99.8 111 45.9
Sp1g07270 Schrenkiella parvula HOM05D007536 ORTHO05D009390 9.9e-19 99.4 177 39.0
Gohir.A13G167300 Gossypium hirsutum HOM05D007536 ORTHO05D009390 3.8e-18 97.4 120 44.2
Actinidia34755 Actinidia chinensis HOM05D007536 ORTHO05D009390 6.4e-18 96.7 82 57.3
Carub.0001s0797 Capsella rubella HOM05D007536 ORTHO05D009390 1.1e-17 95.9 155 38.7
Glyma.20G222900 Glycine max HOM05D007536 ORTHO05D009390 1.1e-17 95.9 113 43.4
Aa31LG11G11200 Aethionema arabicum HOM05D007536 ORTHO05D009390 1.4e-17 95.5 118 42.4
CANSAT54G0748 Cannabis sativa HOM05D007536 ORTHO05D009390 1.4e-17 95.5 186 34.4
COL.COLO4_15479 Corchorus olitorius HOM05D007536 ORTHO05D009390 1.4e-17 95.5 128 42.2
Sabra19G0031900 Salix brachista HOM05D007536 ORTHO05D009390 1.4e-17 95.5 184 35.9
Gohir.D13G172800 Gossypium hirsutum HOM05D007536 ORTHO05D009390 1.9e-17 95.1 143 39.2
Nn1g02810 Nelumbo nucifera HOM05D007536 ORTHO05D009390 2.4e-17 94.7 169 36.1
AT1G08610 Arabidopsis thaliana HOM05D007536 ORTHO05D009390 3.2e-17 94.4 171 38.0
Gorai.013G187800 Gossypium raimondii HOM05D007536 ORTHO05D009390 3.2e-17 94.4 188 35.6
Ah.04g163100 Amaranthus hybridus HOM05D007536 ORTHO05D009390 4.2e-17 94.0 178 34.8
CAN.G358.142 Capsicum annuum HOM05D007536 ORTHO05D009390 4.2e-17 94.0 191 33.5
Sopen04g005180 Solanum pennellii HOM05D007536 ORTHO05D009390 5.5e-17 93.6 184 37.0
Potri.019G019200 Populus trichocarpa HOM05D007536 ORTHO05D009390 7.1e-17 93.2 184 34.2
Eucgr.B02149 Eucalyptus grandis HOM05D007536 ORTHO05D009390 9.3e-17 92.8 186 33.9
THA.LOC104821264 Tarenaya hassleriana HOM05D007536 ORTHO05D009390 9.3e-17 92.8 121 43.8
AL1G19040 Arabidopsis lyrata HOM05D007536 ORTHO05D009390 1.2e-16 92.4 179 35.8
MELO3C010129.2 Cucumis melo HOM05D007536 ORTHO05D009390 1.6e-16 92.0 187 34.2
CARHR008520 Cardamine hirsuta HOM05D007536 ORTHO05D009390 2.7e-16 91.3 110 40.9
Thhalv10007213m.g Eutrema salsugineum HOM05D007536 ORTHO05D009390 3.5e-16 90.9 165 36.4
Gohir.D11G257700 Gossypium hirsutum HOM05D007536 ORTHO05D009390 3.5e-16 90.9 123 42.3
Gorai.007G276000 Gossypium raimondii HOM05D007536 ORTHO05D009390 3.5e-16 90.9 123 42.3
CDE04G1469 Ceratophyllum demersum HOM05D007536 ORTHO05D009390 4.6e-16 90.5 116 42.2
Sed0002849 Sechium edule HOM05D007536 ORTHO05D009390 4.6e-16 90.5 175 30.9
ClCG03G009740 Citrullus lanatus HOM05D007536 ORTHO05D009390 6.0e-16 90.1 190 35.3
Gohir.A11G247400 Gossypium hirsutum HOM05D007536 ORTHO05D009390 1.0e-15 89.4 116 43.1
Duzib177G0261 Durio zibethinus HOM05D007536 ORTHO05D009390 1.3e-15 89.0 116 45.7
Sed0012628 Sechium edule HOM05D007536 ORTHO05D009390 1.3e-15 89.0 187 33.2
AUR62004838 Chenopodium quinoa HOM05D007536 ORTHO05D009390 1.8e-15 88.6 124 41.1
Sc20g0000630 Simmondsia chinensis HOM05D007536 ORTHO05D009390 5.1e-15 87.0 185 32.4
TPR.G22324 Trifolium pratense HOM05D007536 ORTHO05D009390 5.1e-15 87.0 109 45.9
CsaV3_1G045080 Cucumis sativus L. HOM05D007536 ORTHO05D009390 6.7e-15 86.7 185 32.4
PSO210G0145 Papaver somniferum HOM05D007536 ORTHO05D009390 6.7e-15 86.7 145 36.6
Solyc04g010050.4 Solanum lycopersicum HOM05D007536 ORTHO05D009390 8.7e-15 86.3 168 36.9
Migut.L01514 Erythranthe guttata HOM05D007536 ORTHO05D009390 1.5e-14 85.5 195 32.8
Ca_10014_v3 Cicer arietinum L. HOM05D007536 ORTHO05D009390 1.9e-14 85.1 119 40.3
Aqoxy5G00211 Aquilegia oxysepala HOM05D007536 ORTHO05D009390 4.3e-14 84.0 118 40.7
PGR142G0030 Punica granatum HOM05D007536 ORTHO05D009390 7.4e-14 83.2 184 34.8
Lalb_Chr02g0149121 Lupinus albus HOM05D007536 ORTHO05D009390 2.1e-13 81.6 114 37.7
Medtr1g080120 Medicago truncatula HOM05D007536 ORTHO05D009390 2.1e-13 81.6 115 38.3
DCAR_023085 Daucus carota HOM05D007536 ORTHO05D009390 2.8e-13 81.3 129 36.4
AUR62040928 Chenopodium quinoa HOM05D007536 ORTHO05D009390 1.4e-12 79.0 189 33.3
Lsat_1_v5_gn_8_24901 Lactuca sativa HOM05D007536 ORTHO05D009390 1.4e-12 79.0 159 33.3
Psat6g142640 Pisum sativum HOM05D007536 ORTHO05D009390 1.4e-12 79.0 159 32.7
MBI07_g16910_MAGBIO Magnolia biondii HOM05D007536 ORTHO05D009390 3.1e-12 77.8 103 40.8
Lj5g0027095 Lotus japonicus HOM05D007536 ORTHO05D009390 5.3e-12 77.0 114 37.7
Phvul.008G151830 Phaseolus vulgaris HOM05D007536 ORTHO05D009390 9.0e-12 76.3 113 38.1
C08p49910 Brassica napus HOM05D007536 ORTHO05D009390 1.2e-11 75.9 64 51.6
BraA09t41926Z Brassica rapa HOM05D007536 ORTHO05D009390 2.0e-11 75.1 63 50.8
BcaC07g41933 Brassica carinata HOM05D007536 ORTHO05D009390 3.4e-11 74.3 63 50.8
BolC8t52519H Brassica oleracea HOM05D007536 ORTHO05D009390 3.4e-11 74.3 63 50.8
Lalb_Chr21g0311181 Lupinus albus HOM05D007536 ORTHO05D009390 3.4e-11 74.3 114 37.7
SalBow1G3025 Salvia bowleyana HOM05D007536 ORTHO05D009390 3.4e-11 74.3 71 47.9
A09p65820 Brassica napus HOM05D007536 ORTHO05D009390 4.5e-11 73.9 63 50.8
VMungo0720G1101 Vigna mungo HOM05D007536 ORTHO05D009390 5.8e-11 73.6 113 38.9
ECA233G3269 Erigeron canadensis HOM05D007536 ORTHO05D009390 2.2e-10 71.6 119 35.3
FAN02G3965 Fragaria x ananassa HOM05D007536 ORTHO05D009390 4.9e-10 70.5 70 52.9
HanXRQChr07g0204491 Helianthus annuus HOM05D007536 ORTHO05D009390 1.4e-09 68.9 119 33.6
ATR0736G097 Amborella trichopoda HOM05D007536 ORTHO05D009390 7.1e-09 66.6 57 49.1
Glyma.10G166300 Glycine max HOM05D007536 ORTHO05D009390 1.1e-06 59.3 70 40.0
HPP92_018004 Vanilla planifolia HOM05D044659 ORTHO05D009390 5.7e-06 57.0 64 43.8
HPP92_026683 Vanilla planifolia HOM05D044659 ORTHO05D009390 5.7e-06 57.0 64 43.8


User provided reference genes

Program Settings