Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.2e-205 719.5 360 100.0
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 9.3e-76 288.1 254 59.8
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 2.8e-64 250.0 252 52.4
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 4.5e-62 242.7 252 50.4
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 9.9e-62 241.5 247 51.0
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.1e-60 238.0 250 50.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 3.2e-60 236.5 245 50.6
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 9.3e-60 235.0 258 48.1
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 9.3e-60 235.0 253 48.6
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 2.1e-59 233.8 247 50.2
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 2.7e-59 233.4 250 49.6
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.7e-59 233.4 235 52.8
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.5e-59 233.0 241 51.5
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 4.6e-59 232.6 243 50.6
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 7.9e-59 231.9 235 53.2
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.0e-58 231.5 241 51.5
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.0e-58 231.5 241 51.5
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.0e-58 231.5 245 50.6
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.0e-58 231.5 247 49.0
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.3e-58 231.1 249 50.6
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 8.7e-58 228.4 249 49.8
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 8.7e-58 228.4 244 49.6
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.3e-57 226.5 240 48.8
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 3.3e-57 226.5 248 48.0
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 3.3e-57 226.5 274 46.7
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 4.3e-57 226.1 235 51.5
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 5.6e-57 225.7 247 47.8
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 5.6e-57 225.7 237 51.1
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 7.4e-57 225.3 247 46.6
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.6e-56 224.2 248 49.2
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 2.8e-56 223.4 242 47.5
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.1e-55 221.5 248 49.2
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.4e-55 221.1 245 48.2
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.4e-55 221.1 242 49.2
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.8e-55 220.7 242 47.9
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 3.1e-55 219.9 248 48.8
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 3.1e-55 219.9 248 49.2
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 4.0e-55 219.5 253 49.0
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 4.0e-55 219.5 254 46.5
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 5.3e-55 219.2 245 47.3
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 6.9e-55 218.8 251 46.6
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 1.5e-54 217.6 253 48.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 2.6e-54 216.9 258 45.7
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.4e-54 216.5 253 46.6
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 5.8e-54 215.7 263 45.6
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 7.6e-54 215.3 241 49.4
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 7.6e-54 215.3 253 46.6
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.0e-53 214.9 256 46.9
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.0e-53 214.9 236 47.9
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.3e-53 214.5 243 47.7
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-53 214.5 238 47.9
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 3.8e-53 213.0 247 44.9
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 6.5e-53 212.2 240 47.5
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 6.5e-53 212.2 238 47.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 6.5e-53 212.2 245 46.5
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.1e-52 211.5 262 45.0
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-52 211.1 238 47.5
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-52 211.1 238 47.5
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.4e-52 211.1 238 47.5
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.9e-52 210.7 235 46.8
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.9e-52 210.7 242 45.9
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.5e-52 210.3 240 47.1
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 4.2e-52 209.5 255 45.5
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 5.5e-52 209.1 284 41.9
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 5.5e-52 209.1 245 46.9
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 5.5e-52 209.1 247 44.5
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 2.7e-51 206.8 241 46.1
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.7e-51 206.8 249 45.0
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 2.7e-51 206.8 238 47.5
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 6.0e-51 205.7 250 46.8
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 6.0e-51 205.7 237 46.8
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.0e-50 204.9 250 42.8
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.3e-50 204.5 281 42.3
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.3e-50 204.5 247 44.9
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 1.8e-50 204.1 236 45.8
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.8e-50 204.1 267 42.7
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 2.3e-50 203.8 262 42.4
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 3.9e-50 203.0 247 46.6
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 3.9e-50 203.0 247 46.6
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 3.9e-50 203.0 255 43.9
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 5.1e-50 202.6 245 45.3
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.5e-49 201.1 260 46.2
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.5e-49 200.3 237 45.6
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.5e-49 200.3 241 46.1
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 4.3e-49 199.5 241 46.1
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 4.8e-48 196.1 243 44.9
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 4.8e-48 196.1 243 44.9
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 4.8e-48 196.1 258 43.0
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 3.1e-47 193.4 243 44.0
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 3.1e-47 193.4 243 44.0
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 6.9e-47 192.2 213 46.9
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 6.9e-47 192.2 273 40.3
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 6.9e-47 192.2 243 44.4
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-46 191.4 245 44.1
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 3.4e-46 189.9 282 41.1
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.3e-45 188.0 152 58.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.7e-45 187.6 168 51.8
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.7e-45 187.6 251 39.4
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.2e-45 187.2 249 43.4
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 3.9e-42 176.4 249 40.6
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 8.2e-40 168.7 236 42.8
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.4e-39 167.2 226 40.7
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.2e-37 160.6 217 39.6
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.5e-36 157.1 242 38.0
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 9.4e-36 155.2 224 40.6
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.5e-33 147.1 184 42.4
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 7.4e-33 145.6 190 42.1
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 1.3e-32 144.8 289 37.0
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 2.2e-32 144.1 133 54.9
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 6.3e-32 142.5 263 32.7
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 8.2e-32 142.1 224 35.3
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 4.5e-30 136.3 174 40.2
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 9.4e-28 128.6 220 35.0
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 2.3e-26 124.0 157 42.0
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 5.1e-26 122.9 177 35.0
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.8e-26 122.1 153 42.5
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.1e-23 115.2 188 37.8
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 5.3e-23 112.8 108 51.9
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 9.4e-20 102.1 69 72.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.8e-18 97.8 230 33.9
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 5.7e-17 92.8 82 48.8
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 2.8e-16 90.5 84 46.4
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 4.8e-16 89.7 82 47.6
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 4.8e-16 89.7 82 47.6
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 2.4e-15 87.4 128 39.1
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 7.0e-15 85.9 238 28.2
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.6e-14 84.7 83 47.0
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 3.5e-14 83.6 118 39.0
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.9e-13 80.5 144 31.9
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-10 71.6 80 48.8
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 1.7e-08 64.7 66 47.0
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 4.8e-08 63.2 59 52.5
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.8e-08 63.2 59 52.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.8e-08 63.2 59 52.5
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 8.3e-08 62.4 54 57.4
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.1e-07 62.0 60 53.3
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.4e-07 60.8 59 50.8
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.4e-07 60.8 59 50.8
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 5.4e-07 59.7 115 29.6


User provided reference genes

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