Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10235 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 9.9e-64 246.5 115 100.0
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 6.6e-60 233.8 112 96.4
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 9.6e-59 229.9 112 93.8
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 1.1e-57 226.5 110 92.7
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 1.1e-57 226.5 110 92.7
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 1.4e-57 226.1 109 94.5
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 1.8e-57 225.7 109 93.6
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 2.4e-57 225.3 112 92.9
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.4e-57 225.3 112 91.1
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.4e-57 225.3 112 91.1
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 2.4e-57 225.3 112 91.1
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 5.2e-57 224.2 112 91.1
Gohir.A09G052700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 5.2e-57 224.2 112 91.1
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 5.2e-57 224.2 112 92.9
AUR62014580 Chenopodium quinoa HOM05D004167 ORTHO05D005012 6.8e-57 223.8 114 87.7
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 6.8e-57 223.8 112 91.1
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 1.2e-56 223.0 112 91.1
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 1.5e-56 222.6 112 90.2
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 3.4e-56 221.5 109 93.6
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 4.4e-56 221.1 112 87.5
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 4.4e-56 221.1 112 88.4
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 4.4e-56 221.1 112 89.3
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 5.8e-56 220.7 109 91.7
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.7e-55 219.2 112 90.2
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.7e-55 219.2 112 90.2
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 2.2e-55 218.8 112 90.2
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 3.8e-55 218.0 112 89.3
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 4.9e-55 217.6 112 90.2
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 4.9e-55 217.6 112 90.2
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 4.9e-55 217.6 110 90.0
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 4.9e-55 217.6 110 90.9
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 4.9e-55 217.6 112 90.2
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 4.9e-55 217.6 112 91.1
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 6.4e-55 217.2 112 88.4
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 8.4e-55 216.9 112 88.4
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 8.4e-55 216.9 110 90.9
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 8.4e-55 216.9 112 87.5
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 8.4e-55 216.9 112 87.5
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 8.4e-55 216.9 112 87.5
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 1.1e-54 216.5 112 90.2
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.1e-54 216.5 112 89.3
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 1.1e-54 216.5 112 88.4
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 1.4e-54 216.1 111 91.0
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 1.4e-54 216.1 112 87.5
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 1.4e-54 216.1 109 91.7
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 1.9e-54 215.7 105 93.3
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 1.9e-54 215.7 112 89.3
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.9e-54 215.7 112 89.3
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.9e-54 215.7 112 89.3
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 2.4e-54 215.3 110 90.0
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 2.4e-54 215.3 112 87.5
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.4e-54 215.3 112 89.3
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 3.2e-54 214.9 112 86.6
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 3.2e-54 214.9 110 89.1
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 4.2e-54 214.5 109 89.9
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 4.2e-54 214.5 110 89.1
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 4.2e-54 214.5 112 89.3
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 5.4e-54 214.2 109 89.0
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 7.1e-54 213.8 109 89.9
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 7.1e-54 213.8 110 90.0
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 9.3e-54 213.4 109 88.1
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 1.2e-53 213.0 110 86.4
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 1.2e-53 213.0 110 86.4
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 1.2e-53 213.0 112 88.4
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 1.6e-53 212.6 109 89.0
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 1.6e-53 212.6 109 89.0
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.6e-53 212.6 112 86.6
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 1.6e-53 212.6 109 89.9
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 3.5e-53 211.5 112 87.5
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 3.5e-53 211.5 109 86.2
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 3.5e-53 211.5 112 86.6
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 4.6e-53 211.1 110 88.2
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 4.6e-53 211.1 110 88.2
CARHR134470 Cardamine hirsuta HOM05D004167 ORTHO05D005012 6.0e-53 210.7 109 87.2
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 7.8e-53 210.3 110 87.3
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 7.8e-53 210.3 110 88.2
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 1.3e-52 209.5 109 89.9
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 1.3e-52 209.5 109 87.2
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 2.3e-52 208.8 109 86.2
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 3.0e-52 208.4 109 88.1
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 3.9e-52 208.0 109 88.1
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 3.9e-52 208.0 109 88.1
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 3.9e-52 208.0 109 88.1
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 3.9e-52 208.0 109 88.1
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 3.9e-52 208.0 107 88.8
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 3.9e-52 208.0 109 88.1
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 3.9e-52 208.0 109 88.1
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 6.6e-52 207.2 111 84.7
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 8.7e-52 206.8 109 85.3
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 8.7e-52 206.8 109 85.3
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 8.7e-52 206.8 112 86.6
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 1.1e-51 206.5 103 92.2
BcaC01g05486 Brassica carinata HOM05D004167 ORTHO05D005012 1.5e-51 206.1 109 86.2
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 1.5e-51 206.1 109 86.2
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 1.5e-51 206.1 109 86.2
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 1.5e-51 206.1 109 87.2
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 1.9e-51 205.7 109 87.2
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 1.9e-51 205.7 112 87.5
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 1.9e-51 205.7 109 84.4
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 1.9e-51 205.7 109 84.4
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 9.6e-51 203.4 120 82.5
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 2.8e-50 201.8 109 83.5
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 3.6e-50 201.4 109 86.2
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 1.8e-49 199.1 105 87.6
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 2.4e-49 198.7 140 69.3
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 1.5e-48 196.1 109 84.4
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 1.5e-48 196.1 109 84.4
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 1.1e-46 189.9 112 78.6
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 1.9e-46 189.1 112 78.6
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 2.4e-46 188.7 112 79.5
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 9.3e-46 186.8 109 79.8
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 2.7e-45 185.3 109 79.8
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 3.5e-45 184.9 109 78.0
MSTRG.8242 Avicennia marina HOM05D004167 ORTHO05D005012 3.9e-44 181.4 101 85.1
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 2.8e-42 175.3 110 71.8
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 2.4e-41 172.2 109 75.2
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 3.1e-41 171.8 109 71.6
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 4.0e-41 171.4 84 90.5
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 6.9e-41 170.6 83 90.4
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 6.9e-41 170.6 126 69.0
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 9.0e-41 170.2 111 70.3
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 2.6e-40 168.7 82 93.9
BraA02t07167Z Brassica rapa HOM05D004167 ORTHO05D005012 3.8e-39 164.9 109 72.5
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 4.9e-39 164.5 109 72.5
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 5.5e-38 161.0 82 90.2
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 2.1e-37 159.1 100 79.0
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 3.5e-37 158.3 102 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 3.3e-35 151.8 109 63.3
Hma1.2p1_0683F.1_g202820 Hydrangea macrophylla HOM05D004167 ORTHO05D005012 1.8e-33 146.0 73 91.8
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 3.1e-33 145.2 71 94.4
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 4.2e-30 134.8 64 96.9
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 5.5e-30 134.4 82 69.5
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 6.0e-29 131.0 111 56.8
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 3.4e-24 115.2 106 47.2
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 2.9e-23 112.1 105 44.8
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 3.2e-22 108.6 51 96.1
SHI22568 Sapria himalayana HOM05D004167 ORTHO05D005012 5.5e-22 107.8 74 67.6
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 1.2e-21 106.7 112 44.6
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 1.0e-20 103.6 50 96.0
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 6.7e-20 100.9 50 92.0
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 1.9e-19 99.4 50 94.0
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 3.3e-19 98.6 49 91.8
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 3.1e-17 92.0 50 84.0
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 4.1e-17 91.7 52 84.6
Cfa024819 Carpinus fangiana HOM05D004167 ORTHO05D005012 9.0e-17 90.5 115 35.7
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 1.0e-15 87.0 110 40.9
SHI22567 Sapria himalayana HOM05D004167 ORTHO05D005012 2.1e-13 79.3 48 75.0
EL10Ac2g03543 Beta vulgaris HOM05D004167 ORTHO05D005012 4.3e-11 71.6 81 50.6
arahy.Tifrunner.gnm1.ann1.I9KCKB Arachis hypogaea HOM05D001644 ORTHO05D001641 4.5e-08 61.6 30 90.0
EL10Ac5g11410 Beta vulgaris HOM05D004167 ORTHO05D005012 1.9e-06 56.2 29 89.7
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 7.2e-06 54.3 31 80.6


User provided reference genes

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