Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 3.7e-188 661.4 327 100.0
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 3.7e-116 422.2 330 67.6
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 4.9e-108 395.2 311 66.2
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 1.3e-105 387.1 312 65.1
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 1.0e-97 360.9 311 58.2
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 1.5e-96 357.1 319 59.2
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 5.6e-96 355.1 325 59.4
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 4.2e-91 339.0 311 56.9
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 1.3e-89 334.0 313 56.9
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 1.3e-89 334.0 312 57.1
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 3.0e-89 332.8 285 60.7
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 8.7e-89 331.3 311 55.6
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 7.3e-88 328.2 311 55.3
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 7.3e-88 328.2 325 55.7
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 9.6e-88 327.8 311 55.9
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 2.8e-87 326.2 323 55.1
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 3.6e-87 325.9 313 55.3
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 4.8e-87 325.5 313 56.2
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 4.8e-87 325.5 311 55.9
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 4.0e-86 322.4 312 55.1
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 6.9e-86 321.6 312 54.5
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 6.9e-86 321.6 311 55.0
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 9.0e-86 321.2 311 53.4
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 9.0e-86 321.2 311 55.0
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 2.0e-85 320.1 311 55.3
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 4.4e-85 318.9 347 51.0
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 2.9e-84 316.2 311 55.0
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 4.9e-84 315.5 319 54.2
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 1.9e-83 313.5 312 54.2
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 3.2e-83 312.8 283 58.0
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 4.2e-83 312.4 313 54.3
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 4.2e-83 312.4 311 52.4
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 4.2e-83 312.4 326 51.2
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 4.2e-83 312.4 326 51.2
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 5.4e-83 312.0 311 52.7
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 9.3e-83 311.2 311 52.7
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 1.2e-82 310.8 263 62.0
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 1.2e-82 310.8 286 54.9
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 1.2e-82 310.8 311 53.4
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 2.1e-82 310.1 261 61.7
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 2.7e-82 309.7 311 52.7
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 6.0e-82 308.5 311 52.7
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 6.0e-82 308.5 311 52.1
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 7.8e-82 308.1 311 52.4
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 7.8e-82 308.1 313 52.1
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 7.8e-82 308.1 311 53.1
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 1.7e-81 307.0 339 50.1
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 2.3e-81 306.6 311 51.8
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 3.0e-81 306.2 311 54.0
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 6.6e-81 305.1 311 53.1
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 6.6e-81 305.1 320 53.1
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 6.6e-81 305.1 309 54.7
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 1.1e-80 304.3 311 53.1
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 1.9e-80 303.5 311 51.4
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 4.3e-80 302.4 315 52.7
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.3e-80 302.4 311 52.7
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 9.6e-80 301.2 313 52.4
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 9.6e-80 301.2 302 54.3
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 1.3e-79 300.8 311 52.1
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 2.1e-79 300.1 311 52.1
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 4.8e-79 298.9 311 51.4
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 4.8e-79 298.9 311 51.1
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 5.3e-78 295.4 311 52.4
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 4.5e-77 292.4 311 50.8
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 5.8e-77 292.0 311 53.1
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 9.9e-77 291.2 315 51.1
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 1.7e-76 290.4 313 49.8
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 6.4e-76 288.5 329 49.8
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 8.4e-76 288.1 257 58.8
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 1.1e-75 287.7 314 51.0
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 1.4e-75 287.3 311 54.3
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 2.4e-75 286.6 315 51.4
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 4.2e-75 285.8 311 50.5
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 2.1e-74 283.5 311 50.5
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 2.7e-74 283.1 341 46.9
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 4.6e-74 282.3 314 49.7
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 4.6e-74 282.3 314 49.7
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 4.6e-74 282.3 311 48.2
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 4.6e-74 282.3 311 48.9
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 1.3e-73 280.8 286 52.8
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 1.8e-73 280.4 356 46.1
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 1.8e-73 280.4 315 49.8
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 1.8e-73 280.4 287 51.2
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 3.9e-73 279.3 311 47.9
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 8.7e-73 278.1 231 61.5
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 4.3e-72 275.8 287 52.3
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 2.1e-71 273.5 338 47.3
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 4.8e-71 272.3 322 47.2
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 2.6e-69 266.5 317 50.5
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 2.9e-68 263.1 312 49.7
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 4.6e-66 255.8 258 51.6
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 3.7e-63 246.1 237 56.5
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 3.7e-63 246.1 286 50.7
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 6.2e-63 245.4 260 53.8
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 8.2e-63 245.0 319 46.4
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 1.4e-62 244.2 289 47.8
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 6.9e-62 241.9 237 57.0
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 1.2e-61 241.1 268 49.3
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 1.7e-60 237.3 256 50.8
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 2.2e-60 236.9 171 67.3
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 5.0e-60 235.7 162 69.8
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 5.5e-59 232.3 274 45.6
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 4.3e-56 222.6 171 64.3
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 9.7e-56 221.5 237 51.1
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 3.7e-55 219.5 261 44.4
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 3.7e-55 219.5 157 68.8
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 6.3e-55 218.8 151 68.9
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 1.8e-54 217.2 262 48.9
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 1.5e-53 214.2 265 43.8
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 2.0e-53 213.8 265 46.8
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 1.9e-51 207.2 264 45.5
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 3.9e-49 199.5 259 44.4
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.0e-48 197.2 258 45.0
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 2.5e-48 196.8 247 47.0
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 8.5e-44 181.8 162 54.3
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 7.2e-43 178.7 212 47.6
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.7e-42 176.0 212 47.2
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 1.4e-41 174.5 229 45.9
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 2.6e-40 170.2 141 62.4
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 3.3e-40 169.9 211 45.5
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 4.1e-38 162.9 237 44.7
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 5.5e-35 152.5 309 35.0
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 2.1e-34 150.6 270 33.7
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 2.3e-33 147.1 186 44.1
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 2.2e-31 140.6 296 32.4
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 4.5e-29 132.9 162 50.0
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 6.1e-26 122.5 244 32.4
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 6.1e-26 122.5 311 29.3
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 3.7e-23 113.2 311 28.6
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 2.2e-15 87.4 129 40.3
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 2.2e-15 87.4 247 32.4
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 2.0e-13 80.9 75 52.0
CDE02G3151 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 2.9e-12 77.0 84 42.9
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 1.2e-08 65.1 103 39.8
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 1.3e-07 61.6 112 38.4
Zm00001eb265170 Zea mays HOM05D001689 ORTHO05D001643 9.2e-06 55.5 62 50.0


User provided reference genes

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