Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.7e-125 450.7 223 100.0
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.7e-123 444.9 220 100.0
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 9.4e-79 297.4 228 67.5
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.1e-78 296.2 215 71.6
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.7e-78 295.0 226 67.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.1e-78 294.7 226 67.7
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 3.4e-76 288.9 215 69.8
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 4.9e-75 285.0 220 65.9
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 3.1e-74 282.3 220 65.5
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 9.2e-74 280.8 222 66.7
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.5e-73 278.9 218 67.0
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.6e-70 270.0 222 62.6
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.6e-70 270.0 221 63.3
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.6e-70 268.9 222 62.6
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.6e-70 268.9 214 65.0
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.6e-70 268.9 214 65.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 6.1e-70 268.1 222 61.7
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 6.1e-70 268.1 223 63.7
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.0e-69 267.3 233 60.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.4e-69 266.9 215 61.9
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.3e-69 266.2 220 61.4
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.0e-69 265.4 222 61.3
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.2e-68 263.8 225 63.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.2e-68 263.8 214 62.6
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.5e-68 263.5 215 62.8
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.0e-68 263.1 222 59.9
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.6e-68 262.7 215 62.3
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 4.4e-68 261.9 221 61.5
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 7.5e-68 261.2 220 60.9
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-67 260.4 222 60.8
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.7e-67 260.0 214 64.0
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.7e-67 260.0 215 61.9
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 2.2e-67 259.6 226 61.5
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.2e-67 259.6 222 61.3
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.2e-67 259.6 221 61.1
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 4.9e-67 258.5 228 61.8
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 8.3e-67 257.7 213 61.5
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 8.3e-67 257.7 215 60.9
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.1e-66 257.3 218 61.5
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.4e-66 256.9 222 59.5
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.4e-66 256.1 216 61.6
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.2e-66 255.8 222 59.5
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 9.2e-66 254.2 227 59.9
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.2e-65 253.8 221 59.7
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.2e-65 253.8 223 60.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.2e-65 253.8 217 61.8
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.6e-65 253.4 221 58.8
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 5.9e-65 251.5 218 62.8
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 7.8e-65 251.1 218 57.8
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.0e-64 250.8 212 59.9
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.3e-64 250.4 221 61.1
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.3e-64 250.4 227 59.5
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.7e-64 250.0 221 58.8
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 3.0e-64 249.2 215 59.5
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 5.0e-64 248.4 220 59.5
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.1e-63 247.3 221 57.9
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.5e-63 246.9 221 57.9
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-63 246.9 222 59.0
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 3.3e-63 245.7 212 59.4
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 5.6e-63 245.0 228 58.3
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 5.6e-63 245.0 213 58.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 7.3e-63 244.6 222 57.2
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.6e-62 243.4 213 58.2
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.6e-62 243.4 212 61.3
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 2.8e-62 242.7 221 57.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.6e-62 242.3 222 56.8
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 3.6e-62 242.3 218 58.7
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.6e-62 242.3 221 57.0
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 4.7e-62 241.9 225 56.9
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 4.7e-62 241.9 219 58.4
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 6.2e-62 241.5 222 57.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 8.0e-62 241.1 224 56.2
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.0e-61 240.7 222 55.9
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.8e-61 240.0 225 56.0
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.1e-61 239.2 214 57.5
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 3.1e-61 239.2 222 56.3
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 4.0e-61 238.8 221 56.1
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 6.8e-61 238.0 222 55.9
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 8.9e-61 237.7 217 58.1
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.2e-60 237.3 224 55.8
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.5e-60 236.9 222 56.3
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 3.4e-60 235.7 212 59.0
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 3.4e-60 235.7 224 55.4
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 7.5e-60 234.6 213 57.3
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 9.8e-60 234.2 208 59.1
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.3e-59 233.8 221 55.7
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.2e-58 229.2 212 56.6
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 3.2e-58 229.2 211 57.3
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.4e-58 228.4 217 55.8
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 9.2e-58 227.6 221 55.7
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.6e-57 226.9 211 58.3
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.0e-57 226.5 221 55.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.0e-57 226.5 222 54.5
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.0e-57 226.5 225 55.1
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.7e-57 226.1 221 54.8
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.7e-57 226.1 221 54.8
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 3.5e-57 225.7 221 54.8
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 6.0e-57 224.9 220 55.0
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 6.0e-57 224.9 225 54.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.7e-56 223.4 224 55.8
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.3e-56 223.0 201 57.2
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.3e-56 223.0 213 56.3
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.9e-56 222.2 154 70.8
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.9e-56 222.2 215 57.2
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 5.0e-56 221.9 226 54.9
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 5.0e-56 221.9 213 54.0
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 5.0e-56 221.9 221 53.4
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 9.5e-55 217.6 216 53.2
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 8.1e-54 214.5 195 60.0
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.8e-53 213.4 228 53.1
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.8e-53 213.4 194 58.2
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.3e-53 213.0 216 55.1
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 8.9e-53 211.1 214 52.8
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.2e-52 210.7 213 53.5
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.2e-52 210.7 209 54.1
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 4.9e-51 205.3 170 60.6
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.1e-50 204.1 225 49.8
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 4.1e-50 202.2 224 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.3e-48 197.2 215 48.8
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.1e-48 195.3 163 61.3
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.1e-47 194.1 230 47.0
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.1e-45 186.0 134 65.7
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.1e-42 177.6 197 51.8
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 7.1e-42 174.9 229 45.4
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 9.2e-42 174.5 225 48.0
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-41 174.1 220 46.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.7e-41 172.9 121 65.3
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 4.6e-41 172.2 188 53.7
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.5e-39 166.4 163 55.2
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.6e-38 162.5 215 45.6
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.4e-37 160.6 124 60.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.4e-37 160.6 148 54.7
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 3.1e-37 159.5 188 52.1
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 8.9e-37 157.9 184 47.8
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.5e-36 157.1 125 61.6
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 4.4e-36 155.6 211 46.4
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.3e-35 154.1 122 59.0
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 7.1e-34 148.3 220 40.9
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.7e-33 146.4 147 47.6
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.6e-30 137.1 125 52.0
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.8e-30 136.3 171 55.6
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 8.1e-30 134.8 77 71.4
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.0e-28 130.2 183 46.4
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.0e-24 117.9 165 43.6
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.0e-24 117.9 165 43.6
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-24 117.5 174 44.3
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 5.1e-24 115.5 152 48.0
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.6e-22 109.4 123 43.9
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 8.1e-22 108.2 112 57.1
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.2e-20 104.4 72 62.5
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 7.1e-18 95.1 144 46.5
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 3.3e-15 86.3 50 64.0
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.6e-14 84.0 62 56.5
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 8.1e-14 81.6 54 63.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.2e-12 77.8 142 31.7
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 2.9e-11 73.2 98 46.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.4e-10 70.9 37 75.7
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 9.3e-10 68.2 63 60.3
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 8.7e-08 61.6 45 55.6
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.1e-07 61.2 28 82.1
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.5e-07 60.8 95 44.2
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.9e-07 60.5 103 45.6
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.5e-07 60.1 159 30.2


User provided reference genes

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