Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 3.6e-174 614.8 299 100.0
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 6.0e-105 384.8 337 63.5
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 6.9e-93 344.7 294 60.5
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 1.2e-92 344.0 298 59.4
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.2e-92 344.0 294 61.2
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 1.7e-91 340.1 292 60.3
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 6.5e-91 338.2 296 60.1
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 2.5e-90 336.3 294 58.8
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 4.2e-90 335.5 294 59.5
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 2.1e-89 333.2 294 58.8
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 2.7e-89 332.8 296 60.1
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.6e-89 332.0 254 64.2
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 7.9e-89 331.3 292 57.9
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.0e-88 330.9 295 59.0
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.8e-88 330.1 293 59.0
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.0e-88 329.3 299 57.2
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 5.1e-88 328.6 299 58.2
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 6.7e-88 328.2 292 57.5
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 6.7e-88 328.2 296 57.1
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 8.8e-88 327.8 295 59.7
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 1.9e-87 326.6 295 56.9
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 7.4e-87 324.7 271 61.6
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.3e-86 323.9 293 57.3
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 2.8e-86 322.8 304 55.9
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.4e-85 320.5 269 58.7
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 2.4e-85 319.7 299 56.9
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 6.9e-85 318.2 269 58.4
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 9.1e-85 317.8 295 55.6
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.6e-84 316.2 295 57.6
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 3.4e-84 315.8 255 62.4
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 4.5e-84 315.5 267 59.2
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.5e-84 315.5 269 57.6
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 7.7e-84 314.7 293 56.0
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 1.3e-83 313.9 304 56.2
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.2e-83 313.2 298 57.4
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 2.2e-83 313.2 294 54.4
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 2.9e-83 312.8 272 57.7
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 6.5e-83 311.6 293 54.6
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 8.5e-83 311.2 304 52.6
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.5e-82 309.7 294 56.5
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 3.2e-82 309.3 255 59.6
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 4.2e-82 308.9 272 57.7
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 5.5e-82 308.5 292 55.1
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 1.6e-81 307.0 294 55.4
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.1e-81 306.6 276 56.5
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 4.7e-81 305.4 292 55.1
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.9e-80 302.4 276 56.2
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 3.9e-80 302.4 255 60.0
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 7.4e-79 298.1 315 52.1
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 7.4e-79 298.1 257 59.1
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 1.7e-78 297.0 264 56.4
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 4.8e-78 295.4 300 52.3
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 6.3e-78 295.0 280 56.4
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 8.2e-78 294.7 238 61.3
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 2.4e-77 293.1 288 53.1
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 9.1e-77 291.2 293 51.5
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.5e-76 290.4 293 51.2
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 3.5e-76 289.3 293 50.9
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 3.5e-76 289.3 240 61.7
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 7.7e-76 288.1 270 54.8
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 1.0e-75 287.7 260 56.9
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 1.3e-75 287.3 292 51.0
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.3e-75 287.3 259 56.4
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.7e-75 287.0 264 55.3
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.9e-75 286.2 259 56.4
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 6.5e-75 285.0 285 52.6
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 6.5e-75 285.0 238 58.8
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 1.1e-74 284.3 264 54.5
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.4e-74 283.9 264 54.5
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.4e-74 283.9 332 47.3
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 3.2e-74 282.7 263 55.5
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 1.6e-73 280.4 289 52.9
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 1.6e-73 280.4 271 52.0
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 3.9e-72 275.8 279 53.4
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 5.2e-72 275.4 297 48.5
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 8.8e-72 274.6 308 50.3
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 3.3e-71 272.7 298 48.7
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 7.4e-71 271.6 294 47.3
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 9.7e-71 271.2 262 54.6
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 2.8e-70 269.6 294 46.6
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 3.7e-70 269.2 291 51.2
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 8.2e-70 268.1 278 51.8
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 1.1e-69 267.7 293 50.2
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 1.8e-69 266.9 278 51.4
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 1.8e-69 266.9 278 51.4
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 2.4e-69 266.5 280 51.8
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 5.3e-69 265.4 283 50.9
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.2e-68 264.2 203 65.0
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.2e-68 264.2 243 55.1
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.6e-68 263.1 297 47.8
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 4.5e-68 262.3 288 51.0
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 5.9e-68 261.9 278 51.1
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 1.0e-67 261.2 260 52.7
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 1.7e-67 260.4 237 55.3
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 2.9e-67 259.6 235 55.3
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.5e-66 257.3 292 48.6
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.9e-66 256.9 298 48.3
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 1.9e-66 256.9 260 53.5
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 4.2e-66 255.8 260 53.5
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.2e-65 254.2 235 54.5
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 2.1e-65 253.4 235 54.0
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.3e-64 250.0 292 45.2
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 3.0e-64 249.6 263 51.3
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.6e-63 246.5 296 45.3
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.4e-61 240.7 269 47.2
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 5.9e-60 235.3 296 45.3
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 1.0e-59 234.6 297 44.1
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.0e-56 224.6 295 43.7
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.2e-54 216.9 293 42.0
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 5.9e-52 208.8 263 43.0
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 1.2e-49 201.1 295 41.7
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 8.6e-35 151.8 161 49.1
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 1.2e-33 147.9 230 35.2
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 1.4e-32 144.4 230 33.9
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 4.7e-25 119.4 111 59.5
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 2.6e-23 113.6 120 42.5
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 1.3e-19 101.3 234 29.1
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 1.6e-17 94.4 117 43.6


User provided reference genes

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