Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 0.0e+00 1971.8 1054 100.0
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 0.0e+00 1518.8 1071 75.5
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 8.0e-245 851.3 1004 53.2
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.4e-235 819.3 1090 49.2
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.9e-217 760.4 1170 43.5
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 5.8e-195 685.6 1003 45.8
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.4e-166 589.7 1128 39.6
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 7.7e-163 578.9 972 42.6
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.7e-154 551.2 979 41.6
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 3.5e-139 500.4 1191 33.9
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 2.8e-120 437.6 1006 36.4
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.4e-116 423.3 945 36.7
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 3.1e-111 407.5 1260 31.0
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 4.0e-111 407.1 952 35.1
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.4e-110 403.7 1182 32.2
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 6.0e-99 366.7 1169 32.4
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.9e-97 361.7 988 33.1
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 9.0e-95 352.8 950 32.8
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.0e-90 339.3 988 31.6
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 6.6e-90 336.7 1055 30.9
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.4e-85 320.1 1226 29.0
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 2.4e-84 318.2 989 31.7
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.2e-83 315.8 958 31.5
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.1e-83 315.1 992 31.9
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.9e-83 313.2 965 31.8
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.0e-82 311.2 998 31.8
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 2.5e-81 308.1 994 32.0
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.3e-81 307.8 1063 30.1
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.1e-80 305.1 969 32.1
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 4.8e-80 303.9 970 31.9
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 1.8e-79 302.0 1002 31.3
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.4e-79 301.6 1022 31.2
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 4.0e-79 300.8 987 30.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 5.3e-79 300.4 1009 31.7
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.2e-78 299.3 1011 31.4
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.2e-78 299.3 991 31.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 4.9e-77 293.9 991 30.6
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.9e-76 292.0 1161 29.1
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 3.5e-75 287.7 990 30.0
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 4.6e-75 287.3 1145 28.1
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 5.1e-74 283.9 1139 28.7
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 3.3e-73 281.2 472 42.8
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.1e-71 276.2 989 30.2
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.2e-70 272.7 896 30.0
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.0e-70 271.9 988 30.5
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 4.5e-70 270.8 832 30.2
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 4.5e-70 270.8 913 30.3
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 2.2e-69 268.5 903 30.2
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 8.7e-66 256.5 977 29.5
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.1e-65 256.1 975 30.6
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 3.3e-65 254.6 963 28.9
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.4e-63 249.2 964 29.4
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.1e-60 239.6 1016 28.4
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.2e-60 238.0 844 30.6
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 5.5e-60 237.3 1012 28.6
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.6e-59 235.7 1175 29.3
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 2.1e-59 235.3 1174 26.7
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 3.6e-59 234.6 1016 28.4
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 6.7e-58 230.3 1175 29.3
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 2.5e-52 211.8 1182 28.6
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 1.6e-51 209.1 1120 26.6
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 2.1e-51 208.8 1136 26.7
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.0e-50 204.9 968 27.1
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 3.9e-50 204.5 1131 26.7
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 3.5e-46 191.4 1100 26.7
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 7.7e-46 190.3 956 26.8
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 1.2e-43 183.0 941 27.6
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 2.1e-43 182.2 870 28.3
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 5.2e-42 177.6 1224 25.7
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 5.3e-39 167.5 1022 27.1
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 9.1e-39 166.8 526 29.1
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 3.5e-38 164.9 672 26.2
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 2.2e-37 162.2 1238 25.1
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 5.5e-36 157.5 1160 23.6
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 8.8e-34 150.2 1027 24.0
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.6e-33 148.7 244 43.4
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 7.5e-33 147.1 496 30.4
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 4.8e-32 144.4 1050 25.2
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.0e-29 136.7 986 25.1
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.0e-29 136.7 986 25.1
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 6.5e-29 134.0 965 26.9
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.1e-28 133.3 879 24.7
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 3.2e-28 131.7 865 26.0
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 5.5e-28 131.0 991 26.3
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.7e-27 127.9 258 36.0
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 8.0e-27 127.1 984 25.1
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 8.0e-27 127.1 761 24.8
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.0e-26 126.7 581 26.5
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 3.0e-26 125.2 1024 25.5
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 6.8e-26 124.0 930 25.9
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.5e-25 122.9 846 25.2
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 2.8e-24 118.6 994 24.4
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 3.7e-24 118.2 920 24.9
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 6.3e-24 117.5 549 24.6
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 8.3e-24 117.1 833 25.0
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 9.1e-23 113.6 1036 23.5
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.9e-22 110.9 160 45.0
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 3.3e-20 105.1 396 27.0
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 4.2e-20 104.8 1030 25.5
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 7.2e-20 104.0 1041 23.3
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.2e-19 103.2 467 25.7
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 8.0e-19 100.5 935 23.6
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 8.9e-18 97.1 915 24.6
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.2e-17 96.7 458 25.1
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 7.5e-17 94.0 148 43.2
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 7.5e-17 94.0 720 22.8
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.7e-16 92.8 557 24.6
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 1.7e-16 92.8 718 24.4
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 8.3e-16 90.5 317 28.1
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 7.0e-15 87.4 231 28.6
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 3.5e-14 85.1 294 26.2
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 1.3e-13 83.2 859 23.4
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 3.9e-13 81.6 645 26.0
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 6.6e-13 80.9 495 25.9
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.3e-12 78.6 201 28.9
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 5.6e-12 77.8 209 31.6
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 5.6e-12 77.8 209 31.6
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 9.5e-12 77.0 114 43.0
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.2e-11 76.6 175 30.9
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.2e-11 76.6 292 29.1
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.2e-11 76.6 465 24.3
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.6e-11 76.3 183 31.7
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 3.6e-11 75.1 187 32.1
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 3.6e-11 75.1 187 32.1
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 4.7e-11 74.7 624 23.1
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 1.0e-10 73.6 453 23.6
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 1.8e-10 72.8 183 31.1
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.8e-10 72.8 234 30.8
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.3e-10 72.4 438 24.7
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 2.3e-10 72.4 477 24.5
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 3.1e-10 72.0 227 30.0
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 3.1e-10 72.0 183 31.1
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 4.0e-10 71.6 241 27.4
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 4.0e-10 71.6 241 27.4
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 4.0e-10 71.6 241 27.4
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 5.2e-10 71.2 196 30.1
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 5.2e-10 71.2 532 22.9
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 6.8e-10 70.9 183 31.7
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.8e-10 70.9 391 25.1
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.5e-09 69.7 972 21.8
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 1.5e-09 69.7 205 30.7
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 1.5e-09 69.7 205 30.7
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.0e-09 69.3 524 23.9
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 2.6e-09 68.9 246 28.5
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 7.5e-09 67.4 461 26.0
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 1.3e-08 66.6 914 22.2
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.9e-08 65.5 534 23.0
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 2.9e-08 65.5 421 24.7
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 3.7e-08 65.1 387 25.1
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 8.3e-08 63.9 182 31.9
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 8.3e-08 63.9 182 31.9
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 1.1e-07 63.5 530 24.2
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.1e-07 63.5 451 25.1
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 4.1e-07 61.6 509 24.2
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 2.7e-06 58.9 433 22.2
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.7e-06 58.9 191 27.2
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 3.5e-06 58.5 108 34.3
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 4.6e-06 58.2 334 21.3
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 7.8e-06 57.4 174 28.2


User provided reference genes

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