Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.1e-218 763.1 406 100.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.0e-204 715.7 406 91.1
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.5e-188 661.8 406 84.2
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.6e-185 652.9 406 83.5
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 3.4e-183 645.2 406 83.5
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 9.8e-183 643.7 401 83.3
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.8e-179 631.7 406 82.0
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.1e-178 630.2 407 79.6
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.9e-178 629.4 406 81.3
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.1e-177 625.9 406 78.8
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.6e-177 625.2 406 78.8
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.6e-177 625.2 406 78.8
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.3e-176 622.5 406 78.6
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.7e-174 616.3 406 78.6
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 2.2e-174 615.9 407 78.1
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 2.2e-174 615.9 407 78.1
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.2e-174 615.9 406 77.1
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.2e-174 615.9 401 80.5
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.4e-173 613.2 406 78.1
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.8e-173 612.8 406 77.1
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.4e-173 612.5 410 78.8
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.1e-173 611.7 410 78.8
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 7.0e-173 610.9 408 78.2
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.5e-172 608.6 406 77.6
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 6.0e-172 607.8 406 78.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 7.8e-172 607.4 406 77.6
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.3e-171 605.9 406 78.8
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.0e-171 605.5 405 79.8
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 3.9e-171 605.1 406 77.3
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 5.0e-171 604.7 421 74.8
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 5.0e-171 604.7 408 77.5
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 5.0e-171 604.7 408 77.5
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 5.0e-171 604.7 406 78.3
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 8.6e-171 604.0 401 77.6
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-170 603.6 410 77.1
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.1e-170 603.6 410 76.8
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.9e-170 602.8 410 76.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.3e-170 602.1 410 77.1
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 4.3e-170 601.7 406 78.1
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 5.6e-170 601.3 406 75.4
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.5e-170 600.5 410 76.6
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.2e-169 600.1 402 78.4
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.6e-169 599.7 406 75.6
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.0e-169 597.4 410 76.8
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.1e-168 597.0 406 75.1
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 2.3e-168 595.9 402 75.6
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 3.1e-168 595.5 401 76.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 4.4e-167 591.7 401 77.6
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.8e-167 591.3 410 77.1
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 7.5e-167 590.9 406 76.4
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.3e-166 590.1 404 77.0
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.7e-166 589.7 407 76.7
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 3.7e-166 588.6 406 75.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.7e-166 588.6 400 76.8
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 3.7e-166 588.6 400 77.0
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 2.4e-165 585.9 402 76.4
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.4e-165 585.9 406 75.4
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 2.4e-165 585.9 406 75.6
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 5.4e-165 584.7 454 70.9
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 9.2e-165 583.9 406 73.6
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.2e-164 583.6 406 73.9
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.2e-164 583.6 407 76.7
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 2.7e-164 582.4 444 73.0
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 2.3e-163 579.3 406 74.1
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.9e-162 576.2 407 75.4
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 9.5e-162 573.9 407 73.7
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 2.1e-161 572.8 407 76.9
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.8e-160 569.7 406 72.7
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 4.0e-160 568.5 451 66.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 8.9e-160 567.4 401 72.6
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.0e-159 566.2 408 73.3
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 5.8e-159 564.7 406 73.9
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 7.5e-159 564.3 401 73.6
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.3e-158 563.5 406 71.4
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.2e-158 562.8 406 72.4
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.2e-158 562.8 406 72.4
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 2.9e-158 562.4 406 73.4
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 2.9e-158 562.4 438 67.4
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 6.4e-158 561.2 390 73.1
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 8.3e-158 560.8 401 73.6
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.4e-157 560.1 410 72.9
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.4e-157 560.1 402 73.4
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.4e-157 560.1 401 73.1
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 3.2e-157 558.9 401 74.3
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 7.1e-157 557.8 406 72.7
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.2e-156 557.0 401 72.8
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.1e-156 556.2 406 71.2
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.3e-155 552.7 412 70.6
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.9e-155 552.0 406 71.7
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 8.6e-155 550.8 402 71.6
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.5e-154 550.1 401 70.8
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.5e-154 549.3 406 71.4
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 3.3e-154 548.9 401 72.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 5.6e-154 548.1 406 71.7
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 4.7e-153 545.0 406 71.2
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 6.2e-153 544.7 406 70.9
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.1e-152 543.9 402 71.9
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.4e-152 543.5 406 70.9
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.4e-152 542.7 408 71.1
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.2e-152 541.6 399 69.9
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 6.8e-152 541.2 406 71.7
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-151 540.4 414 70.3
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.2e-151 540.4 406 67.5
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 5.8e-151 538.1 407 72.0
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.4e-149 533.5 406 68.5
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.9e-149 533.1 432 65.3
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.1e-149 531.9 406 69.5
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 5.4e-149 531.6 406 68.2
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.3e-147 526.9 406 66.3
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.0e-147 525.8 406 70.2
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.0e-147 525.8 407 70.3
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.1e-146 523.9 399 66.4
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 8.1e-145 517.7 406 65.3
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 3.5e-140 502.3 412 68.0
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 7.8e-140 501.1 404 67.8
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 6.6e-139 498.0 399 64.9
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.8e-136 490.0 406 61.6
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.1e-129 466.5 362 66.0
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.8e-128 463.4 519 52.4
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.8e-126 455.7 443 61.9
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 2.4e-125 453.0 333 73.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.0e-123 446.0 318 73.0
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.0e-123 446.0 296 77.4
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.6e-121 440.3 377 63.1
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 3.4e-119 432.6 435 58.2
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.6e-113 413.7 406 55.2
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.5e-109 398.7 405 58.8
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.4e-101 371.3 408 50.5
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.4e-101 371.3 408 50.5
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 8.8e-99 364.8 408 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 4.4e-98 362.5 400 51.5
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 5.3e-88 328.9 408 44.6
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 7.7e-87 325.1 203 83.7
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.8e-80 303.9 402 48.5
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 7.2e-69 265.4 358 46.9
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 5.9e-63 245.7 433 40.0
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.5e-61 240.4 271 55.0
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.8e-59 234.2 300 48.0
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.6e-54 215.7 150 76.7
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.3e-43 180.6 146 68.5
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 2.4e-32 144.1 101 73.3
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.5e-26 124.8 419 30.5
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.9e-24 117.9 73 79.5
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.9e-24 117.9 128 51.6
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.4e-24 117.5 95 65.3
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 7.1e-24 115.9 84 64.3
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.7e-22 111.3 187 43.3
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.5e-21 107.5 84 75.0
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 8.1e-20 102.4 70 72.9
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.2e-17 94.4 68 66.2
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 2.2e-17 94.4 82 57.3
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 8.4e-17 92.4 383 27.2
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.1e-16 92.0 437 24.7
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 2.5e-13 80.9 453 23.0
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 7.6e-10 69.3 117 44.4
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.7e-09 68.2 55 67.3
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 4.6e-07 60.1 86 46.5
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.9e-06 57.0 28 85.7
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 8.7e-06 55.8 37 75.7
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 8.7e-06 55.8 44 68.2


User provided reference genes

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