Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09990 Vaccinium macrocarpon HOM05D002596 ORTHO05D002851 4.7e-109 397.9 204 100.0
Rhsim09G0181800 Rhododendron simsii HOM05D002596 ORTHO05D002851 3.2e-33 146.0 212 47.6
Dinv10564 Davidia involucrata HOM05D002596 ORTHO05D002851 1.1e-20 104.4 212 40.1
CSS0002935 Camellia sinensis var. sinensis HOM05D002596 ORTHO05D002851 7.7e-19 98.2 217 41.0
Actinidia00981 Actinidia chinensis HOM05D002596 ORTHO05D002851 3.6e-16 89.4 205 35.1
QL08p064189 Quercus lobata HOM05D002596 ORTHO05D002851 1.0e-15 87.8 205 40.5
Actinidia00651 Actinidia chinensis HOM05D002596 ORTHO05D002851 1.8e-15 87.0 206 35.4
PGSC0003DMG400017898 Solanum tuberosum HOM05D002596 ORTHO05D002851 2.3e-15 86.7 224 33.9
Solyc06g050730.4 Solanum lycopersicum HOM05D002596 ORTHO05D002851 1.5e-14 84.0 221 35.3
Lsat_1_v5_gn_8_13321 Lactuca sativa HOM05D002596 ORTHO05D002851 2.6e-14 83.2 209 32.1
Sopen06g016290 Solanum pennellii HOM05D002596 ORTHO05D002851 4.4e-14 82.4 225 34.7
Nitab4.5_0003369g0020 Nicotiana tabacum HOM05D002596 ORTHO05D002851 3.7e-13 79.3 212 39.2
MSTRG.8911 Avicennia marina HOM05D002596 ORTHO05D002851 8.2e-13 78.2 214 33.6
Oeu008078.1 Olea europaea HOM05D002596 ORTHO05D002851 8.2e-13 78.2 215 34.9
TAR369G0601 Trochodendron aralioides HOM05D002596 ORTHO05D002851 1.8e-12 77.0 210 35.7
CANSAT56G2578 Cannabis sativa HOM05D002596 ORTHO05D002851 3.1e-12 76.3 210 34.8
Prupe.2G258800 Prunus persica HOM05D002596 ORTHO05D002851 1.2e-11 74.3 212 32.5
Thecc.10G008200 Theobroma cacao HOM05D002596 ORTHO05D002851 1.6e-11 73.9 206 31.6
Eucgr.J00156 Eucalyptus grandis HOM05D002596 ORTHO05D002851 2.7e-11 73.2 216 34.3
TAR633G2496 Trochodendron aralioides HOM05D002596 ORTHO05D002851 2.7e-11 73.2 210 32.9
Hund15863 Selenicereus undatus HOM05D002596 ORTHO05D002851 4.5e-11 72.4 203 32.0
EL10Ac2g04304 Beta vulgaris HOM05D002596 ORTHO05D002851 5.9e-11 72.0 200 32.5
Haze_17315 Corylus avellana HOM05D002596 ORTHO05D002851 2.9e-10 69.7 186 34.4
Gohir.D06G165700 Gossypium hirsutum HOM05D002596 ORTHO05D002851 2.9e-10 69.7 206 31.6
SalBow3G2803 Salvia bowleyana HOM05D002596 ORTHO05D002851 2.9e-10 69.7 201 30.8
SGA_v2.0_scaffold60G20943 Striga asiatica HOM05D002596 ORTHO05D002851 2.9e-10 69.7 208 32.2
Cc02_g05800 Coffea canephora HOM05D002596 ORTHO05D002851 3.8e-10 69.3 218 31.7
MD04G1168100 Malus domestica HOM05D002596 ORTHO05D002851 6.5e-10 68.6 42 69.0
arahy.Tifrunner.gnm1.ann1.UD5IAC Arachis hypogaea HOM05D002596 ORTHO05D002851 8.5e-10 68.2 39 76.9
CiPaw.01G303200 Carya illinoinensis HOM05D002596 ORTHO05D002851 8.5e-10 68.2 211 33.2
Nitab4.5_0002854g0090 Nicotiana tabacum HOM05D002596 ORTHO05D002851 8.5e-10 68.2 41 78.0
COL.COLO4_25816 Corchorus olitorius HOM05D002596 ORTHO05D002851 1.1e-09 67.8 41 73.2
Migut.F00614 Erythranthe guttata HOM05D002596 ORTHO05D002851 1.1e-09 67.8 214 31.8
Nitab4.5_0001291g0010 Nicotiana tabacum HOM05D002596 ORTHO05D002851 1.1e-09 67.8 214 32.7
unitig_88.g27823 Utricularia gibba HOM05D002006 ORTHO05D002128 1.1e-09 67.8 44 72.7
Nitab4.5_0002784g0030 Nicotiana tabacum HOM05D002596 ORTHO05D002851 1.5e-09 67.4 213 33.8
MSTRG.27292 Avicennia marina HOM05D002596 ORTHO05D002851 1.9e-09 67.0 39 74.4
Prupe.6G286300 Prunus persica HOM05D002596 ORTHO05D002851 1.9e-09 67.0 39 71.8
Peaxi162Scf02614g00004 Petunia axillaris HOM05D002596 ORTHO05D002851 3.2e-09 66.2 47 72.3
CiPaw.02G196900 Carya illinoinensis HOM05D002596 ORTHO05D002851 4.2e-09 65.9 203 32.0
Manes.09G113200 Manihot esculenta HOM05D002596 ORTHO05D002851 4.2e-09 65.9 41 68.3
PGR031G1625 Punica granatum HOM05D002596 ORTHO05D002851 4.2e-09 65.9 39 71.8
GSVIVG01032727001 Vitis vinifera HOM05D002596 ORTHO05D002851 4.2e-09 65.9 41 75.6
Cfa017098 Carpinus fangiana HOM05D002596 ORTHO05D002851 5.5e-09 65.5 39 69.2
Haze_21103 Corylus avellana HOM05D002596 ORTHO05D002851 5.5e-09 65.5 39 69.2
Duzib093G1785 Durio zibethinus HOM05D002596 ORTHO05D002851 5.5e-09 65.5 39 71.8
Duzib106G1112 Durio zibethinus HOM05D002596 ORTHO05D002851 5.5e-09 65.5 39 71.8
TWI53G0634 Tripterygium wilfordii HOM05D002596 ORTHO05D002851 5.5e-09 65.5 39 69.2
TWI74G0891 Tripterygium wilfordii HOM05D002596 ORTHO05D002851 5.5e-09 65.5 39 69.2
GSVIVG01030249001 Vitis vinifera HOM05D002596 ORTHO05D002851 5.5e-09 65.5 39 69.2
arahy.Tifrunner.gnm1.ann1.5VLU3V Arachis hypogaea HOM05D002596 ORTHO05D002851 7.2e-09 65.1 36 77.8
CAN.G670.2 Capsicum annuum HOM05D002596 ORTHO05D002851 7.2e-09 65.1 40 72.5
Duzib128G1981 Durio zibethinus HOM05D002596 ORTHO05D002851 7.2e-09 65.1 39 71.8
QL07p033634 Quercus lobata HOM05D002596 ORTHO05D002851 7.2e-09 65.1 39 69.2
Thecc.05G005100 Theobroma cacao HOM05D002596 ORTHO05D002851 7.2e-09 65.1 39 71.8
EL10Ac7g17019 Beta vulgaris HOM05D002596 ORTHO05D002851 9.4e-09 64.7 43 65.1
Cpa.g.sc5.253 Carica papaya HOM05D002596 ORTHO05D002851 9.4e-09 64.7 39 69.2
MD12G1181500 Malus domestica HOM05D002596 ORTHO05D002851 9.4e-09 64.7 39 69.2
Glyma.01G128500 Glycine max HOM05D002596 ORTHO05D002851 1.2e-08 64.3 39 69.2
Glyma.03G041800 Glycine max HOM05D002596 ORTHO05D002851 1.2e-08 64.3 39 69.2
Phvul.010G062000 Phaseolus vulgaris HOM05D002596 ORTHO05D002851 1.2e-08 64.3 39 69.2
RcHm_v2.0_Chr1g0371401 Rosa chinensis HOM05D002596 ORTHO05D002851 1.2e-08 64.3 205 31.7
VMungo0331G1945 Vigna mungo HOM05D002596 ORTHO05D002851 1.2e-08 64.3 39 69.2
arahy.Tifrunner.gnm1.ann1.41HY5P Arachis hypogaea HOM05D002596 ORTHO05D002851 2.1e-08 63.5 42 66.7
arahy.Tifrunner.gnm1.ann1.4TR24J Arachis hypogaea HOM05D002596 ORTHO05D002851 2.1e-08 63.5 42 66.7
arahy.Tifrunner.gnm1.ann1.RX63I5 Arachis hypogaea HOM05D002596 ORTHO05D002851 2.1e-08 63.5 42 66.7
arahy.Tifrunner.gnm1.ann1.VTJ7I3 Arachis hypogaea HOM05D002596 ORTHO05D002851 2.1e-08 63.5 42 66.7
COL.COLO4_14436 Corchorus olitorius HOM05D002596 ORTHO05D002851 2.1e-08 63.5 39 69.2
Gohir.A04G096100 Gossypium hirsutum HOM05D002596 ORTHO05D002851 2.1e-08 63.5 39 69.2
Gohir.A06G159900 Gossypium hirsutum HOM05D002596 ORTHO05D002851 2.1e-08 63.5 206 29.1
Duzib106G1894 Durio zibethinus HOM05D002596 ORTHO05D002851 2.7e-08 63.2 39 69.2
Lj6g0025671 Lotus japonicus HOM05D002596 ORTHO05D002851 2.7e-08 63.2 39 69.2
Rhsim05G0226900 Rhododendron simsii HOM05D002596 ORTHO05D002851 2.7e-08 63.2 39 69.2
Ciclev10013155m.g Citrus clementina HOM05D002596 ORTHO05D002851 3.6e-08 62.8 39 66.7
Manes.08G174200 Manihot esculenta HOM05D002596 ORTHO05D002851 3.6e-08 62.8 39 64.1
CiPaw.09G216500 Carya illinoinensis HOM05D002596 ORTHO05D002851 4.7e-08 62.4 39 66.7
THA.LOC104816524 Tarenaya hassleriana HOM05D002596 ORTHO05D002851 4.7e-08 62.4 36 72.2
Dinv25281 Davidia involucrata HOM05D002596 ORTHO05D002851 6.1e-08 62.0 39 66.7
Cpa.g.sc19.107 Carica papaya HOM05D002596 ORTHO05D002851 8.0e-08 61.6 41 70.7
Atru.chr12.130 Acer truncatum HOM05D002596 ORTHO05D002851 1.0e-07 61.2 213 31.0
Ah.08g209930 Amaranthus hybridus HOM05D002596 ORTHO05D002851 1.0e-07 61.2 40 67.5
Aqoxy4G02182 Aquilegia oxysepala HOM05D002596 ORTHO05D002851 1.0e-07 61.2 35 77.1
Thhalv10014886m.g Eutrema salsugineum HOM05D002596 ORTHO05D002851 1.4e-07 60.8 36 72.2
Gorai.012G119700 Gossypium raimondii HOM05D002596 ORTHO05D002851 1.4e-07 60.8 39 66.7
Sed0016364 Sechium edule HOM05D002596 ORTHO05D002851 1.4e-07 60.8 39 66.7
ATR0594G142 Amborella trichopoda HOM05D002596 ORTHO05D002851 1.8e-07 60.5 41 68.3
Dinv35423 Davidia involucrata HOM05D002596 ORTHO05D002851 1.8e-07 60.5 39 64.1
Lalb_Chr05g0229331 Lupinus albus HOM05D002596 ORTHO05D002851 1.8e-07 60.5 39 66.7
Phvul.008G090100 Phaseolus vulgaris HOM05D002596 ORTHO05D002851 2.3e-07 60.1 39 66.7
Actinidia11542 Actinidia chinensis HOM05D002596 ORTHO05D002851 3.0e-07 59.7 39 66.7
Actinidia29060 Actinidia chinensis HOM05D002596 ORTHO05D002851 3.0e-07 59.7 39 66.7
AL6G15250 Arabidopsis lyrata HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
AT5G05360 Arabidopsis thaliana HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
BcaB01g05714 Brassica carinata HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
BcaC06g32246 Brassica carinata HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
BcaC06g32248 Brassica carinata HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
A10p30850 Brassica napus HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
C09p71350 Brassica napus HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
BolC9t59897H Brassica oleracea HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
BraA10t45128Z Brassica rapa HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
ClCG10G022470 Citrullus lanatus HOM05D002596 ORTHO05D002851 3.0e-07 59.7 39 64.1
MELO3C009130.2 Cucumis melo HOM05D002596 ORTHO05D002851 3.0e-07 59.7 39 64.1
CsaV3_3G033390 Cucumis sativus L. HOM05D002596 ORTHO05D002851 3.0e-07 59.7 39 64.1
Sp6g37470 Schrenkiella parvula HOM05D002596 ORTHO05D002851 3.0e-07 59.7 36 69.4
CARHR207880 Cardamine hirsuta HOM05D002596 ORTHO05D002851 4.0e-07 59.3 146 31.5
Ca_07715_v3 Cicer arietinum L. HOM05D002596 ORTHO05D002851 4.0e-07 59.3 39 64.1
Ciclev10033159m.g Citrus clementina HOM05D002596 ORTHO05D002851 4.0e-07 59.3 41 65.9
FvH4_6g10270 Fragaria vesca HOM05D002596 ORTHO05D002851 4.0e-07 59.3 39 61.5
FAN02G3323 Fragaria x ananassa HOM05D002596 ORTHO05D002851 4.0e-07 59.3 39 61.5
FAN14G0533 Fragaria x ananassa HOM05D002596 ORTHO05D002851 4.0e-07 59.3 39 61.5
RcHm_v2.0_Chr3g0461011 Rosa chinensis HOM05D002596 ORTHO05D002851 4.0e-07 59.3 39 61.5
Medtr7g071210 Medicago truncatula HOM05D002596 ORTHO05D002851 5.2e-07 58.9 39 64.1
Os05g0342900 Oryza sativa ssp. japonica HOM05D002596 ORTHO05D002851 5.2e-07 58.9 40 65.0
Peaxi162Scf00304g00025 Petunia axillaris HOM05D002596 ORTHO05D002851 5.2e-07 58.9 41 65.9
Sabra08G0055500 Salix brachista HOM05D002596 ORTHO05D002851 5.2e-07 58.9 41 63.4
ECA233G2102 Erigeron canadensis HOM05D002596 ORTHO05D002851 6.8e-07 58.5 40 65.0
FAN05G4663 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.8e-07 58.5 38 63.2
FAN05G5711 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.8e-07 58.5 38 63.2
Gohir.D04G135900 Gossypium hirsutum HOM05D002596 ORTHO05D002851 6.8e-07 58.5 39 64.1
Lalb_Chr01g0023461 Lupinus albus HOM05D002596 ORTHO05D002851 6.8e-07 58.5 39 64.1
Hund19849 Selenicereus undatus HOM05D002596 ORTHO05D002851 6.8e-07 58.5 37 67.6
MSTRG.5533 Avicennia marina HOM05D002596 ORTHO05D002851 8.8e-07 58.2 39 59.0
Migut.J00085 Erythranthe guttata HOM05D002596 ORTHO05D002851 8.8e-07 58.2 38 63.2
Eucgr.A00636 Eucalyptus grandis HOM05D002596 ORTHO05D002851 8.8e-07 58.2 40 60.0
FvH4_7g25430 Fragaria vesca HOM05D002596 ORTHO05D002851 8.8e-07 58.2 209 30.1
Potri.008G075000 Populus trichocarpa HOM05D002596 ORTHO05D002851 8.8e-07 58.2 41 63.4
Sabra10G0139800 Salix brachista HOM05D002596 ORTHO05D002851 1.2e-06 57.8 38 65.8
AUR62006308 Chenopodium quinoa HOM05D002596 ORTHO05D002851 1.5e-06 57.4 71 36.6
Potri.016G128700 Populus trichocarpa HOM05D002596 ORTHO05D002851 1.5e-06 57.4 41 63.4
TPR.G18658 Trifolium pratense HOM05D002596 ORTHO05D002851 1.5e-06 57.4 39 61.5
Psat0s2845g0240 Pisum sativum HOM05D002596 ORTHO05D002851 2.0e-06 57.0 36 66.7
FAN06G1241 Fragaria x ananassa HOM05D002596 ORTHO05D002851 2.6e-06 56.6 41 61.0
FAN06G2112 Fragaria x ananassa HOM05D002596 ORTHO05D002851 2.6e-06 56.6 41 61.0
Psat5g125880 Pisum sativum HOM05D002596 ORTHO05D002851 2.6e-06 56.6 36 66.7
Aa31LG11G6440 Aethionema arabicum HOM05D002596 ORTHO05D002851 3.4e-06 56.2 34 67.6
FAN01G1065 Fragaria x ananassa HOM05D002596 ORTHO05D002851 3.4e-06 56.2 205 29.8
Oeu020412.1 Olea europaea HOM05D002596 ORTHO05D002851 3.4e-06 56.2 35 65.7
PSO017G1787 Papaver somniferum HOM05D002596 ORTHO05D002851 3.4e-06 56.2 39 69.2
Potri.010G182400 Populus trichocarpa HOM05D002596 ORTHO05D002851 3.4e-06 56.2 197 29.4
vmacro20335 Vaccinium macrocarpon HOM05D002596 ORTHO05D002851 3.4e-06 56.2 39 61.5
CSS0035087 Camellia sinensis var. sinensis HOM05D002596 ORTHO05D002851 4.4e-06 55.8 39 59.0
CDE04G2078 Ceratophyllum demersum HOM05D002596 ORTHO05D002851 4.4e-06 55.8 40 60.0
Glyma.18G209000 Glycine max HOM05D002596 ORTHO05D002851 4.4e-06 55.8 39 59.0
Lalb_Chr07g0190851 Lupinus albus HOM05D002596 ORTHO05D002851 4.4e-06 55.8 36 63.9
Actinidia20775 Actinidia chinensis HOM05D002596 ORTHO05D002851 5.7e-06 55.5 39 59.0
Glyma.09G280000 Glycine max HOM05D002596 ORTHO05D002851 5.7e-06 55.5 34 70.6
Sp4g20770 Schrenkiella parvula HOM05D002596 ORTHO05D002851 5.7e-06 55.5 33 69.7
FAN03G3420 Fragaria x ananassa HOM05D002596 ORTHO05D002851 7.5e-06 55.1 206 29.6
FAN10G2325 Fragaria x ananassa HOM05D002596 ORTHO05D002851 7.5e-06 55.1 41 58.5
Gorai.010G193200 Gossypium raimondii HOM05D002596 ORTHO05D002851 7.5e-06 55.1 232 28.0
CDE04G1410 Ceratophyllum demersum HOM05D002596 ORTHO05D002851 9.8e-06 54.7 40 57.5
DCAR_011867 Daucus carota HOM05D002596 ORTHO05D002851 9.8e-06 54.7 39 61.5
DCAR_023990 Daucus carota HOM05D002596 ORTHO05D002851 9.8e-06 54.7 35 62.9
FAN20G0998 Fragaria x ananassa HOM05D002596 ORTHO05D002851 9.8e-06 54.7 36 61.1
HPP92_025114 Vanilla planifolia HOM05D002596 ORTHO05D002851 9.8e-06 54.7 37 64.9


User provided reference genes

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