Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 0.0e+00 1296.6 644 100.0
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.5e-294 1015.8 629 81.7
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 8.3e-261 903.7 629 73.3
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 1.2e-246 856.7 630 70.2
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.8e-245 851.7 704 64.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 9.3e-236 820.5 629 68.2
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.7e-234 816.2 632 66.3
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 3.9e-234 815.1 635 66.0
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 8.7e-234 813.9 655 64.9
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 9.6e-233 810.4 629 67.9
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 3.1e-231 805.4 633 66.7
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.2e-229 799.3 630 65.1
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 2.9e-229 798.9 635 64.7
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 7.1e-228 794.3 673 61.5
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 5.6e-225 784.6 639 62.6
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 9.6e-225 783.9 628 64.3
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 9.9e-222 773.9 632 63.6
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 8.4e-221 770.8 630 63.3
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 1.4e-220 770.0 627 63.2
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 3.2e-220 768.8 628 62.9
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.2e-220 768.8 630 63.3
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 4.2e-220 768.5 629 63.6
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 7.1e-220 767.7 629 63.0
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 2.1e-219 766.1 629 64.2
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 3.5e-219 765.4 629 62.6
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.0e-218 762.3 629 62.6
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 3.0e-218 762.3 644 61.2
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.9e-217 759.6 629 62.5
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.3e-217 758.8 639 62.1
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 4.0e-215 751.9 629 62.3
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 9.0e-215 750.7 633 61.9
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 9.0e-215 750.7 644 60.9
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.5e-214 750.0 629 63.3
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.5e-214 750.0 629 62.2
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 7.6e-214 747.7 629 63.0
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.6e-214 747.7 629 62.3
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 2.9e-213 745.7 628 60.7
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 3.8e-213 745.3 631 62.9
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 8.4e-213 744.2 634 60.7
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.1e-212 743.8 633 61.1
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.4e-212 743.4 629 61.8
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.9e-212 743.0 628 61.3
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 3.2e-212 742.3 638 60.7
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 7.1e-212 741.1 631 61.8
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 9.3e-212 740.7 631 60.5
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.1e-211 739.6 629 61.5
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.1e-211 739.6 633 60.8
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.7e-211 739.2 664 58.7
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 2.7e-211 739.2 629 61.4
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 4.6e-211 738.4 641 59.8
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 6.0e-211 738.0 628 61.1
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 7.9e-211 737.6 633 60.5
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 2.3e-210 736.1 629 61.0
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 3.0e-210 735.7 631 61.3
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.9e-209 733.0 630 60.2
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.9e-209 733.0 629 61.4
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 2.2e-208 729.6 627 60.8
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.8e-208 728.4 568 66.5
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.1e-207 727.2 629 60.9
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 3.1e-207 725.7 629 61.5
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.9e-207 724.5 611 63.3
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 1.5e-206 723.4 626 60.9
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 2.0e-206 723.0 651 59.6
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 2.6e-206 722.6 631 61.6
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 4.5e-206 721.8 627 61.1
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.9e-204 716.5 631 60.7
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.6e-203 713.4 625 58.9
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 4.6e-203 711.8 629 60.4
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.0e-202 710.7 629 59.5
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.4e-202 710.3 636 59.4
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 1.4e-202 710.3 635 58.9
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 3.0e-202 709.1 628 60.4
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 6.3e-200 701.4 629 58.0
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 1.4e-199 700.3 636 59.0
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 9.1e-199 697.6 628 57.8
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 2.0e-198 696.4 590 61.2
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 3.4e-198 695.7 535 66.4
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 5.9e-198 694.9 634 56.0
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 6.5e-197 691.4 638 57.4
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 8.5e-197 691.0 644 57.1
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 1.6e-195 686.8 634 55.2
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 4.4e-193 678.7 593 60.7
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 8.0e-187 657.9 628 56.5
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 2.3e-186 656.4 631 56.6
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 3.0e-186 656.0 630 55.4
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 5.2e-186 655.2 634 55.2
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.1e-185 654.1 630 55.4
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 2.6e-185 652.9 631 55.2
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 3.3e-185 652.5 633 55.6
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 9.7e-185 651.0 629 55.2
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 2.8e-184 649.4 630 55.4
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 4.1e-183 645.6 630 54.6
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.0e-183 644.8 590 58.1
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 2.0e-182 643.3 630 54.4
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 2.0e-182 643.3 630 54.4
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 9.7e-177 624.4 633 52.9
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 1.3e-176 624.0 628 53.2
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 4.1e-175 619.0 628 52.7
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 7.0e-175 618.2 421 75.1
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 7.5e-169 598.2 638 52.0
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 5.9e-166 588.6 642 50.2
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 4.2e-164 582.4 635 50.6
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 7.0e-159 565.1 652 47.9
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 3.8e-157 559.3 570 53.5
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 5.0e-157 558.9 441 64.9
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 8.6e-157 558.1 570 53.3
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 4.7e-155 552.4 557 55.7
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 1.7e-152 543.9 628 47.9
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.7e-149 533.9 631 46.3
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 3.4e-145 519.6 498 56.4
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 1.5e-137 494.2 580 48.8
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 3.4e-129 466.5 640 41.4
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 3.3e-124 449.9 398 57.5
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 6.6e-117 425.6 606 43.6
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.4e-114 417.9 280 73.9
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 4.0e-114 416.4 635 40.2
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.2e-110 404.8 637 38.3
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.8e-106 391.0 630 39.4
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 4.0e-106 389.8 338 58.3
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 2.9e-104 383.6 359 59.1
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 1.9e-100 370.9 411 52.1
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 1.6e-99 367.9 249 73.1
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 7.4e-92 342.4 659 35.2
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 1.3e-80 305.1 497 40.0
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 5.5e-79 299.7 645 32.7
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.0e-77 295.4 406 46.3
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.4e-74 285.0 250 60.4
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.1e-62 244.6 288 50.7
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 1.0e-56 225.7 317 43.8
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 5.2e-53 213.4 167 64.1
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 7.5e-52 209.5 135 70.4
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 4.5e-49 200.3 590 29.0
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.4e-42 178.7 318 37.4
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.1e-38 164.9 139 56.1
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 3.6e-38 164.1 134 59.7
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 6.8e-37 159.8 128 61.7
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.2e-36 159.1 390 31.8
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 7.3e-31 139.8 116 60.3
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 1.2e-28 132.5 194 41.2
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 1.1e-23 115.9 905 22.2
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.6e-23 113.6 128 43.0
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.2e-22 112.5 84 70.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 2.8e-22 111.3 97 56.7
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.7e-16 92.0 106 49.1
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 7.3e-15 86.7 91 46.2
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 2.0e-12 78.6 57 59.6
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 4.9e-11 73.9 40 80.0
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 4.9e-11 73.9 40 80.0
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.9e-10 72.0 66 53.0
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.9e-10 72.0 66 53.0
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 2.4e-10 71.6 39 79.5
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 3.2e-10 71.2 59 52.5
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 4.2e-10 70.9 39 79.5
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.2e-09 69.3 56 55.4


User provided reference genes

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