Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 5.0e-140 501.1 258 100.0
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 5.8e-80 301.6 260 68.1
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.4e-65 253.8 252 59.1
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.3e-65 251.9 253 59.3
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 4.9e-63 245.4 253 58.1
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.4e-62 243.0 257 58.4
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.5e-61 239.2 253 56.9
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.5e-61 239.2 253 56.9
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 4.6e-61 238.8 253 56.9
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 7.9e-61 238.0 253 57.3
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 5.1e-60 235.3 253 56.5
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 5.1e-60 235.3 253 57.7
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 5.1e-60 235.3 253 56.5
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 6.7e-60 235.0 255 56.1
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 8.7e-60 234.6 253 56.5
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.1e-59 234.2 251 57.4
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.9e-59 233.4 254 55.9
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.5e-59 233.0 257 57.2
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.3e-59 232.3 246 56.9
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 5.6e-59 231.9 257 55.3
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 9.6e-59 231.1 254 56.7
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 9.6e-59 231.1 254 56.7
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.3e-58 230.7 257 56.0
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.6e-58 230.3 253 56.1
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.6e-58 230.3 253 54.5
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 2.8e-58 229.6 253 56.1
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 3.7e-58 229.2 252 56.3
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 4.8e-58 228.8 256 54.7
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 4.8e-58 228.8 233 58.8
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 8.1e-58 228.0 254 55.9
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 8.1e-58 228.0 238 58.0
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.1e-57 227.6 252 54.8
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.4e-57 227.3 263 53.6
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.4e-57 227.3 258 54.7
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.8e-57 226.9 260 55.4
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.8e-57 226.9 260 55.4
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.8e-57 226.9 220 60.5
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.8e-57 226.9 260 55.0
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 1.8e-57 226.9 252 56.7
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 2.4e-57 226.5 265 53.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.4e-57 226.5 257 54.9
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 2.4e-57 226.5 252 54.4
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 3.1e-57 226.1 268 53.7
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 3.1e-57 226.1 252 55.6
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 3.1e-57 226.1 253 54.9
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 3.1e-57 226.1 254 55.5
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.1e-57 226.1 261 55.2
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 5.3e-57 225.3 252 55.6
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 6.9e-57 224.9 252 56.0
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.9e-57 224.9 265 53.2
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 6.9e-57 224.9 246 55.3
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.5e-56 223.8 252 54.4
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.0e-56 223.4 255 54.9
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 2.0e-56 223.4 220 58.6
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.0e-56 223.4 242 55.8
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 2.6e-56 223.0 254 53.9
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-56 223.0 253 55.3
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-56 223.0 253 55.3
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 2.6e-56 223.0 238 56.7
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 2.6e-56 223.0 219 59.8
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 2.6e-56 223.0 253 54.5
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.4e-56 222.6 232 58.2
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 4.5e-56 222.2 250 53.6
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 4.5e-56 222.2 250 53.6
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.0e-55 221.1 219 58.9
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.3e-55 220.7 256 54.7
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.2e-55 219.9 253 54.9
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.2e-55 219.9 253 54.9
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.2e-55 219.9 253 54.9
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.9e-55 219.5 211 60.2
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 6.5e-55 218.4 218 57.8
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 6.5e-55 218.4 249 53.8
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 8.4e-55 218.0 222 58.1
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 8.4e-55 218.0 255 54.5
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.1e-54 217.6 222 58.1
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.1e-54 217.6 273 52.0
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-54 217.6 252 53.2
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-54 217.6 217 58.5
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.1e-54 217.6 257 53.3
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 1.4e-54 217.2 253 53.8
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 2.5e-54 216.5 239 54.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 2.5e-54 216.5 220 58.6
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.2e-54 215.7 242 54.1
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 4.2e-54 215.7 265 50.6
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 2.1e-53 213.4 219 57.5
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.1e-53 213.4 219 57.5
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 2.1e-53 213.4 219 57.5
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 2.1e-53 213.4 265 51.3
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.1e-53 213.4 211 58.3
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.1e-53 213.4 211 58.3
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 7.9e-53 211.5 210 58.6
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.8e-52 210.3 219 58.9
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 2.3e-52 209.9 240 53.3
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.3e-52 209.9 253 51.4
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.3e-52 209.9 222 55.0
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 6.7e-52 208.4 214 54.7
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.1e-51 207.6 210 56.7
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 2.5e-51 206.5 240 52.9
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 3.3e-51 206.1 211 55.0
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.3e-51 205.7 210 56.2
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.3e-50 204.1 210 55.7
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 5.3e-49 198.7 235 52.3
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 5.3e-49 198.7 235 52.3
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 5.3e-49 198.7 235 52.3
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 5.3e-49 198.7 235 52.3
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 5.3e-49 198.7 235 52.3
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.5e-48 197.2 235 51.9
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.5e-48 197.2 235 51.9
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.1e-46 191.0 214 49.5
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 2.5e-46 189.9 242 49.2
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 2.5e-46 189.9 233 52.4
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.6e-45 187.2 214 49.1
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.5e-45 186.0 214 48.6
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.7e-44 181.4 214 48.1
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-39 167.5 216 44.9
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.4e-38 164.1 259 43.6
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.8e-36 157.1 213 47.4
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 2.3e-36 156.8 220 48.2
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 6.7e-36 155.2 265 42.6
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 3.7e-34 149.4 174 52.9
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.5e-32 142.5 214 46.7
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 5.9e-32 142.1 99 78.8
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 1.4e-28 131.0 180 47.2
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.8e-28 130.6 173 47.4
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.8e-28 130.6 212 44.3
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 3.9e-28 129.4 210 38.1
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 5.1e-28 129.0 211 43.6
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 2.2e-26 123.6 168 48.2
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.8e-25 120.6 182 41.2
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.8e-25 120.6 159 48.4
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.8e-25 120.6 59 96.6
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 1.2e-24 117.9 57 98.2
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.0e-24 117.1 194 39.2
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 7.7e-24 115.2 59 91.5
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.0e-23 114.8 182 40.1
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.9e-23 113.2 57 93.0
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.1e-22 111.3 57 91.2
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.9e-22 110.5 96 65.6
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.9e-22 110.5 54 92.6
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 4.2e-22 109.4 181 43.6
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 6.1e-21 105.5 175 42.9
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 6.7e-20 102.1 79 69.6
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 9.1e-17 91.7 57 82.5
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 5.9e-16 89.0 79 60.8
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 5.0e-15 85.9 42 97.6
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.5e-14 83.6 42 92.9
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 6.1e-13 79.0 84 56.0
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.0e-12 78.2 146 39.7
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 6.8e-12 75.5 85 51.8
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 1.8e-09 67.4 78 53.8
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.1e-09 66.6 37 86.5
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 2.7e-08 63.5 36 88.9


User provided reference genes

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