Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.7e-204 715.7 346 100.0
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 8.7e-148 527.3 383 72.1
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 8.2e-138 494.2 342 72.2
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.8e-130 468.4 315 75.9
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.2e-122 443.0 342 64.6
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 4.1e-121 438.7 359 60.7
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.2e-120 437.2 345 63.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.1e-118 430.6 340 62.9
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.2e-117 427.2 353 62.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 3.6e-117 425.6 335 61.5
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.8e-116 423.3 339 61.7
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.8e-116 423.3 339 63.4
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-115 420.2 334 61.7
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.0e-115 419.9 324 62.3
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.6e-115 419.5 338 60.9
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.8e-114 416.0 349 59.0
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.7e-114 415.6 349 58.7
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 6.3e-114 414.8 336 60.1
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 8.2e-114 414.5 337 60.5
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.4e-113 413.7 337 59.9
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.8e-113 413.3 322 62.1
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 9.1e-113 411.0 342 59.4
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.2e-111 406.4 336 61.0
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.9e-110 403.3 346 59.0
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 5.5e-110 401.7 305 65.2
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.7e-109 399.4 302 63.6
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 4.7e-109 398.7 338 58.6
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 6.1e-109 398.3 347 59.9
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.4e-108 397.1 352 58.8
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.8e-108 396.7 343 58.9
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.7e-108 394.8 302 62.9
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 6.7e-108 394.8 302 63.2
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 2.6e-107 392.9 271 67.5
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.3e-107 392.5 343 56.9
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.3e-107 392.5 336 56.8
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 4.4e-107 392.1 337 57.9
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.4e-107 392.1 336 56.8
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.3e-106 390.6 337 59.3
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.7e-106 390.2 328 58.5
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 8.2e-106 387.9 344 57.3
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 8.2e-106 387.9 344 57.3
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.1e-105 387.5 297 61.6
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 3.1e-105 386.0 341 58.9
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 3.1e-105 386.0 391 52.4
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 7.0e-105 384.8 347 57.3
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 2.0e-104 383.3 288 61.1
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 3.5e-104 382.5 347 56.8
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 2.2e-103 379.8 335 55.5
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.2e-103 379.8 340 58.2
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 2.9e-103 379.4 346 55.8
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.5e-102 377.1 382 54.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 4.2e-102 375.6 335 55.8
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 4.2e-102 375.6 344 54.9
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.2e-101 374.0 326 56.7
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-101 374.0 368 54.9
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.1e-101 373.2 338 56.8
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.1e-101 373.2 335 57.9
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.7e-101 372.9 335 56.7
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.6e-101 372.5 343 53.4
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.3e-100 369.8 320 57.8
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 3.0e-100 369.4 269 63.6
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 4.0e-100 369.0 298 59.7
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 5.2e-100 368.6 333 56.2
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 5.2e-100 368.6 342 54.4
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.2e-99 367.5 342 53.8
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.5e-99 367.1 329 56.2
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 2.0e-99 366.7 333 56.2
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.0e-99 366.7 284 59.2
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 2.6e-99 366.3 341 56.3
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 3.4e-99 365.9 342 52.9
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 7.5e-99 364.8 336 55.7
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 7.5e-99 364.8 349 54.7
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.3e-98 364.0 310 60.3
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.7e-98 363.6 364 53.3
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.7e-98 363.6 342 54.4
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.7e-98 363.6 337 56.4
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.7e-98 363.6 372 51.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.2e-98 363.2 334 56.3
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.8e-98 362.8 346 54.0
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 8.3e-98 361.3 255 66.7
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.1e-97 360.9 270 65.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.4e-97 360.5 304 58.6
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.4e-97 359.8 263 62.0
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.1e-97 359.4 337 55.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 4.1e-97 359.0 334 53.3
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 9.1e-97 357.8 340 54.7
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 9.1e-97 357.8 336 53.9
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.2e-96 357.5 343 55.1
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.2e-96 357.5 320 57.5
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.6e-96 357.1 347 53.6
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 2.0e-96 356.7 339 55.5
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 2.7e-96 356.3 317 56.8
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.5e-96 355.9 233 73.4
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 3.5e-96 355.9 306 59.5
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.5e-96 355.9 317 54.6
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.7e-95 353.6 340 54.1
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.3e-95 353.2 273 62.3
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.2e-94 348.2 345 51.3
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 7.2e-94 348.2 270 62.6
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.2e-93 347.4 316 55.4
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.3e-92 343.2 345 49.9
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 5.2e-92 342.0 364 49.5
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 6.8e-92 341.7 272 60.7
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.2e-91 340.9 291 56.4
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 2.0e-91 340.1 272 60.7
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.4e-91 339.3 296 55.7
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.3e-90 337.4 309 53.7
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 3.7e-90 335.9 307 53.7
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 4.9e-90 335.5 264 59.5
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.0e-87 327.8 305 56.4
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.3e-87 326.6 349 48.1
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 9.5e-86 321.2 244 61.9
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 8.9e-84 314.7 276 56.2
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.7e-82 309.3 251 57.8
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.0e-75 287.0 348 45.4
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.9e-73 280.4 250 56.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.0e-73 278.5 256 55.5
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.0e-73 278.5 213 61.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.2e-72 277.7 267 50.9
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.6e-69 267.3 248 52.8
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.8e-69 266.5 211 62.6
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.7e-66 257.3 148 81.8
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.3e-66 255.0 229 55.0
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.9e-65 253.8 253 49.8
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 7.8e-64 248.4 215 60.5
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.5e-62 243.4 177 71.8
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.5e-62 243.4 182 62.6
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 3.3e-62 243.0 260 47.3
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 3.3e-62 243.0 260 47.3
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.2e-61 241.1 270 45.6
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.6e-61 239.6 212 58.5
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 3.8e-58 229.6 156 65.4
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.8e-53 213.4 278 37.8
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 4.4e-51 206.1 166 61.4
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-50 204.5 232 48.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.9e-50 203.4 181 56.4
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.2e-43 181.4 116 70.7
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.2e-43 181.4 211 46.0
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.5e-43 181.0 271 36.9
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 7.9e-40 168.7 319 34.2
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.6e-37 161.0 207 40.1
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 5.3e-36 156.0 149 53.0
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.4e-33 147.9 145 52.4
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 3.2e-33 146.7 129 56.6
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.6e-30 136.0 107 55.1
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 4.0e-28 129.8 169 47.9
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 7.1e-25 119.0 284 31.0
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.1e-20 105.1 76 60.5
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 4.5e-19 99.8 72 59.7
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 3.8e-18 96.7 98 45.9
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.5e-18 95.9 75 54.7
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 2.5e-17 94.0 72 59.7
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.1e-16 90.9 75 62.7
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 9.7e-14 82.0 130 43.8
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.4e-09 68.2 36 77.8
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 4.7e-08 63.2 41 65.9
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 6.1e-08 62.8 46 58.7


User provided reference genes

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