Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 0.0e+00 1679.1 890 100.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 0.0e+00 1106.3 933 67.1
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 2.4e-306 1055.4 949 65.1
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 7.1e-303 1043.9 941 65.0
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.6e-297 1025.4 921 63.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 7.9e-270 934.1 932 58.7
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.4e-269 933.3 932 58.7
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.3e-269 932.6 929 58.9
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 9.7e-268 927.2 926 57.5
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 4.1e-266 921.8 933 56.6
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 3.8e-264 915.2 921 58.0
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 2.1e-262 909.4 925 57.4
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 6.1e-262 907.9 920 57.3
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 2.3e-261 906.0 932 57.5
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.2e-260 903.7 928 56.6
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 2.2e-259 899.4 896 58.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.8e-259 899.0 926 55.9
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.7e-259 898.7 925 56.1
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.4e-258 896.0 925 57.1
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.4e-258 896.0 928 55.9
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.4e-258 896.0 923 55.9
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 7.0e-258 894.4 927 56.3
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.0e-256 890.6 923 55.5
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.7e-256 889.8 937 55.5
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.2e-256 889.4 921 56.4
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.5e-255 885.9 930 55.1
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.5e-255 885.9 920 56.1
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.2e-255 885.6 927 55.4
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 9.4e-255 884.0 926 56.9
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.1e-254 882.9 919 56.4
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 2.7e-254 882.5 924 55.5
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 6.1e-254 881.3 925 55.2
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.8e-253 877.9 918 55.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 6.8e-253 877.9 929 55.2
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 9.8e-252 874.0 915 55.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 9.8e-252 874.0 918 54.9
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 4.8e-251 871.7 924 55.2
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.8e-251 871.7 924 54.7
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.8e-250 869.8 925 54.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.4e-250 869.4 928 56.2
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.4e-250 869.4 924 54.5
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.1e-250 869.0 918 54.9
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.1e-250 869.0 922 55.5
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 7.0e-250 867.8 917 54.4
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 9.1e-250 867.5 929 56.5
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.3e-248 863.6 925 55.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 8.5e-248 860.9 877 57.8
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.5e-247 860.1 893 57.2
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.5e-247 859.4 926 54.8
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 9.5e-247 857.4 927 54.0
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 4.7e-246 855.1 921 54.7
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.1e-246 854.7 933 54.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.6e-244 849.4 927 53.1
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 9.8e-244 847.4 928 55.8
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 4.9e-243 845.1 924 53.6
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 5.4e-242 841.6 935 52.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.2e-241 840.5 921 53.7
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.6e-241 840.1 928 53.8
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.3e-240 837.0 928 55.0
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.3e-240 837.0 877 56.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 8.6e-240 834.3 921 54.0
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.5e-239 833.6 934 53.3
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.8e-238 829.3 920 52.4
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.8e-237 826.6 935 53.4
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.2e-237 825.1 928 54.4
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 6.8e-237 824.7 953 52.0
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.8e-234 816.6 921 53.9
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.2e-234 815.8 932 52.5
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.6e-233 813.5 911 54.1
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 6.2e-230 801.6 894 53.0
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.7e-227 793.5 935 51.8
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 9.2e-226 787.7 920 52.9
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.2e-222 775.0 928 52.7
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-220 770.8 649 68.4
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.7e-219 766.9 947 49.9
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.5e-215 753.1 883 51.4
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.6e-212 743.0 928 49.9
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.1e-205 721.1 928 48.8
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.4e-205 719.9 949 47.4
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 8.9e-205 718.0 936 46.4
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.8e-204 715.3 954 46.6
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 7.6e-204 714.9 931 48.0
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.8e-203 712.6 927 47.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 8.4e-203 711.4 945 47.3
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 4.2e-202 709.1 903 47.6
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.0e-200 704.5 912 47.5
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.0e-200 704.5 912 47.5
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.5e-199 700.7 940 45.6
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.1e-198 696.8 912 47.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 9.0e-197 691.4 931 46.1
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 4.5e-196 689.1 934 46.3
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 7.6e-196 688.3 909 46.8
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 7.6e-196 688.3 909 46.8
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-191 673.7 932 45.8
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.1e-184 649.0 523 69.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.6e-180 636.7 925 45.0
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.0e-177 625.5 933 43.3
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 5.1e-176 622.5 774 49.4
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 8.2e-174 615.1 934 42.5
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 6.9e-173 612.1 773 47.5
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.8e-171 606.3 898 43.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 7.2e-154 548.9 707 46.8
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-149 534.6 347 84.4
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.6e-148 531.2 636 50.3
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.7e-147 527.7 655 48.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.2e-139 500.7 444 63.3
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.7e-134 484.6 389 67.9
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 9.8e-127 458.8 958 34.4
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.4e-112 411.8 543 47.7
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 7.5e-111 406.0 925 34.7
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.5e-108 397.1 325 68.3
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 7.8e-108 396.0 940 33.1
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.7e-107 394.8 959 33.4
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.2e-97 362.1 436 49.5
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.5e-87 328.6 488 43.6
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 6.4e-86 323.2 483 42.9
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 8.4e-86 322.8 292 63.0
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 3.5e-84 317.4 199 79.4
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.3e-82 310.8 1017 28.8
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 2.0e-79 301.6 236 69.9
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 6.4e-78 296.6 236 68.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-67 262.7 319 48.9
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 9.6e-66 256.1 214 69.2
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 4.5e-63 247.3 269 56.1
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.0e-62 246.1 347 45.8
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.1e-61 242.7 214 57.9
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.3e-61 239.6 178 73.0
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.5e-47 194.1 182 59.3
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.7e-46 192.2 384 35.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 2.9e-46 191.4 162 61.1
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.3e-43 181.8 955 26.1
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.5e-39 167.5 108 78.7
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 2.9e-38 164.9 154 57.8
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 8.0e-28 130.2 278 38.1
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.4e-27 129.4 158 50.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.7e-26 124.0 76 81.6
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 9.7e-26 123.2 280 36.8
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.3e-25 122.9 140 51.4
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-25 122.9 183 43.2
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.2e-25 122.1 73 71.2
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 6.3e-25 120.6 287 35.9
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.1e-24 118.2 172 43.6
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 2.0e-23 115.5 127 56.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 2.9e-22 111.7 105 54.3
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 7.2e-21 107.1 159 43.4
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.2e-20 106.3 312 28.8
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.7e-20 105.1 188 45.7
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.4e-18 98.2 52 90.4
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 5.7e-18 97.4 874 23.1
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 4.8e-17 94.4 787 23.3
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.5e-13 82.8 55 70.9
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.6e-12 79.3 73 56.2
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 3.6e-12 78.2 213 35.2
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 3.6e-12 78.2 70 57.1
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 4.7e-12 77.8 202 37.1
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.2e-10 73.2 205 35.6
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 4.4e-10 71.2 64 56.2
Actinidia37122 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.2e-09 68.9 164 37.2
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 1.3e-06 59.7 88 44.3
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.9e-06 58.2 101 34.7
Hma1.2p1_0468F.1_g158750 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.0e-06 57.8 88 47.7


User provided reference genes

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